About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr47120
transcription start site region 47120
MGI:5974887

<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223275533
MGI SNP Detail		 Chr5:90620427 Alb within coordinates of
Rr123614 within coordinates of
Tssr47118 within coordinates of
Tssr47120 1990 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31705763
MGI SNP Detail		 Chr5:90620691 Alb within coordinates of
Tssr47120 1726 bp upstream
 SNP G/T G G G G G G T G G G G G T G
rs579532368
MGI SNP Detail		 Chr5:90620702 Alb within coordinates of
Tssr47120 1715 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs31706334
MGI SNP Detail		 Chr5:90620764 Alb within coordinates of
Tssr47120 1653 bp upstream
 SNP C/T T T T T T T C T T T T T C T
rs233286153
MGI SNP Detail		 Chr5:90620806 Alb within coordinates of
Tssr47120 1611 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs257177763
MGI SNP Detail		 Chr5:90620824 Alb within coordinates of
Tssr47120 1593 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs219189496
MGI SNP Detail		 Chr5:90620898 Alb within coordinates of
Tssr47120 1519 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs31706335
MGI SNP Detail		 Chr5:90621816 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 601 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs241900931
MGI SNP Detail		 Chr5:90621858 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 559 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31706336
MGI SNP Detail		 Chr5:90621877 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 540 bp upstream
 SNP C/T C C C C C C T C C C C C T C
rs218082966
MGI SNP Detail		 Chr5:90621901 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 516 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233062538
MGI SNP Detail		 Chr5:90621905 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 512 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31706337
MGI SNP Detail		 Chr5:90621912 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 505 bp upstream
 SNP A/G A A A A A A G A A A A A A G A
rs31706338
MGI SNP Detail		 Chr5:90621924 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 493 bp upstream
 SNP A/G A A A A A A G A A A A A A G A
rs31706339
MGI SNP Detail		 Chr5:90622104 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 313 bp upstream
 SNP A/G A A A A A A A A A A A A G A
rs264412496
MGI SNP Detail		 Chr5:90622244 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 173 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226158611
MGI SNP Detail		 Chr5:90622283 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 134 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245506784
MGI SNP Detail		 Chr5:90622346 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 71 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31706340
MGI SNP Detail		 Chr5:90622417 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 within coordinates of
 SNP C/T C C C C C C T C C C C C C C C
rs31706341
MGI SNP Detail		 Chr5:90622466 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 within coordinates of
 SNP G/T G G G G G G T G G G G G G T G
rs226401529
MGI SNP Detail		 Chr5:90622467 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238110995
MGI SNP Detail		 Chr5:90622491 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 within coordinates of
Tssr51773 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31706342
MGI SNP Detail		 Chr5:90622552 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 11 bp downstream
Tssr51774 within coordinates of
 SNP G/T G G G G G G T G G G G G G T G
rs227242856
MGI SNP Detail		 Chr5:90622632 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 91 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251980999
MGI SNP Detail		 Chr5:90622641 Alb within coordinates of
Rr123615 within coordinates of
Tssr47120 100 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31706343
MGI SNP Detail		 Chr5:90622833 Alb within coordinates of
Tssr47120 292 bp downstream
 SNP C/T T T T T T T C T T T T T T C T
rs233082401
MGI SNP Detail		 Chr5:90622994 Alb within coordinates of
Tssr47120 453 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs31707054
MGI SNP Detail		 Chr5:90623025 Alb within coordinates of
Tssr47120 484 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs31707055
MGI SNP Detail		 Chr5:90623038 Alb within coordinates of
Tssr47120 497 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs31707056
MGI SNP Detail		 Chr5:90623081 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 540 bp downstream
 SNP C/T C C C C C C C C C C C C C T C
rs251342513
MGI SNP Detail		 Chr5:90623110 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 569 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31707057
MGI SNP Detail		 Chr5:90623157 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 616 bp downstream
Tssr47121 within coordinates of
 SNP A/C C C C C C C A C C C C C C A C
rs583853366
MGI SNP Detail		 Chr5:90623209 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 668 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs31707058
MGI SNP Detail		 Chr5:90623212 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 671 bp downstream
 SNP C/T C C C C C C C C C C C C T C
rs260929311
MGI SNP Detail		 Chr5:90623219 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 678 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226317396
MGI SNP Detail		 Chr5:90623226 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 685 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242616848
MGI SNP Detail		 Chr5:90623395 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 854 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248533994
MGI SNP Detail		 Chr5:90623423 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 882 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220240581
MGI SNP Detail		 Chr5:90623459 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 918 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237873667
MGI SNP Detail		 Chr5:90623464 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 923 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255123352
MGI SNP Detail		 Chr5:90623471 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 930 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232156836
MGI SNP Detail		 Chr5:90623502 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 961 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31707059
MGI SNP Detail		 Chr5:90623518 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 977 bp downstream
 SNP C/T T T T T T T C T T T T T T C T
rs264259279
MGI SNP Detail		 Chr5:90623523 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 982 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233679243
MGI SNP Detail		 Chr5:90623524 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 983 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs249825529
MGI SNP Detail		 Chr5:90623679 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1138 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31707060
MGI SNP Detail		 Chr5:90623710 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1169 bp downstream
 SNP A/G G G G G G G G G G G G G G A
rs226411549
MGI SNP Detail		 Chr5:90623720 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1179 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31707061
MGI SNP Detail		 Chr5:90623822 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1281 bp downstream
 SNP A/T T T T T T T A T T T T T A T
rs587482968
MGI SNP Detail		 Chr5:90623836 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1295 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231946399
MGI SNP Detail		 Chr5:90624002 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1461 bp downstream
 SNP C/T C T
rs215822052
MGI SNP Detail		 Chr5:90624039 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1498 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31707062
MGI SNP Detail		 Chr5:90624081 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1540 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs238045433
MGI SNP Detail		 Chr5:90624105 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1564 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264342226
MGI SNP Detail		 Chr5:90624124 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1583 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31707063
MGI SNP Detail		 Chr5:90624130 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1589 bp downstream
 SNP A/G A A A A A A A A A A G A A A G
rs31707794
MGI SNP Detail		 Chr5:90624191 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1650 bp downstream
 SNP C/T T T T T T T T T T T T T T C T
rs248493062
MGI SNP Detail		 Chr5:90624213 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1672 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220391726
MGI SNP Detail		 Chr5:90624220 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1679 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231779650
MGI SNP Detail		 Chr5:90624252 Alb within coordinates of
Rr123616 within coordinates of
Tssr47120 1711 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252177970
MGI SNP Detail		 Chr5:90624517 Rr123616 within coordinates of
Tssr47120 1976 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...