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Mouse SNP Summary
Symbol
Name
ID 		Tssr47178
transcription start site region 47178
MGI:5974945

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Showing SNP(s) 1 - 41 of 41

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221800948
MGI SNP Detail		 Chr5:90905338 Tssr47178 1870 bp upstream
 SNP A/G G A
rs230541346
MGI SNP Detail		 Chr5:90905373 Tssr47178 1835 bp upstream
 SNP C/T C T
rs31722565
MGI SNP Detail		 Chr5:90905453 Tssr47178 1755 bp upstream
 SNP A/G A A A A G G G A G G G G A G A
rs31722566
MGI SNP Detail		 Chr5:90905502 Tssr47178 1706 bp upstream
 SNP A/G G G G G A A A A A A A A A G A A G
rs31722567
MGI SNP Detail		 Chr5:90905611 Tssr47178 1597 bp upstream
 SNP C/T C C C C T T T C C T T T T T T C T T C
rs31722568
MGI SNP Detail		 Chr5:90905978 Tssr47178 1230 bp upstream
 SNP A/G G G G G G G G G G G G G A G G
rs31722569
MGI SNP Detail		 Chr5:90906012 Tssr47178 1196 bp upstream
 SNP A/T T T T T T T T T T T T T A T
rs31722570
MGI SNP Detail		 Chr5:90906196 Tssr47178 1012 bp upstream
 SNP G/T G G G G G G G G G G G G G T G
rs31722571
MGI SNP Detail		 Chr5:90906400 Gm72413 within coordinates of
Tssr47178 808 bp upstream
 SNP A/G G G G A A A G A A A A A A G G A G
rs52136849
MGI SNP Detail		 Chr5:90906427 Gm72413 within coordinates of
Tssr47178 781 bp upstream
 SNP A A A
rs52467124
MGI SNP Detail		 Chr5:90906432 Gm72413 within coordinates of
Tssr47178 776 bp upstream
 SNP C C C
rs243023331
MGI SNP Detail		 Chr5:90906491 Gm72413 within coordinates of
Tssr47178 717 bp upstream
 SNP T T T
rs31722572
MGI SNP Detail		 Chr5:90906562 Gm72413 within coordinates of
Tssr47178 646 bp upstream
 SNP A/C A A A C C C C C C C C A A C A
rs46652555
MGI SNP Detail		 Chr5:90906664 Gm72413 within coordinates of
Tssr47178 544 bp upstream
 SNP A A A
rs48642889
MGI SNP Detail		 Chr5:90906702 Gm72413 within coordinates of
Tssr47178 506 bp upstream
 SNP C C C
rs51795068
MGI SNP Detail		 Chr5:90906726 Gm72413 within coordinates of
Tssr47178 482 bp upstream
 SNP A/T A T
rs31722573
MGI SNP Detail		 Chr5:90906831 Gm72413 within coordinates of
Tssr47178 377 bp upstream
 SNP A/T A A A A A A A A A A A T A
rs31723264
MGI SNP Detail		 Chr5:90906853 Gm72413 within coordinates of
Tssr47178 355 bp upstream
 SNP A/G G G G G G G G G G G G A G
rs31723265
MGI SNP Detail		 Chr5:90906890 Gm72413 within coordinates of
Tssr47178 318 bp upstream
 SNP C/G C C C G G G G G G G G C G G C
rs31723266
MGI SNP Detail		 Chr5:90906922 Gm72413 within coordinates of
Tssr47178 286 bp upstream
 SNP A/G G G G G G G G G G G G G A G
rs31723267
MGI SNP Detail		 Chr5:90907054 Gm72413 within coordinates of
Tssr47178 154 bp upstream
 SNP A/T T T T A A A A A A A A A T A A T
rs31723268
MGI SNP Detail		 Chr5:90907330 Cpgi16042 within coordinates of
Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 104 bp downstream
 SNP A/G G G G A A A A A A A A A G G A G
rs31723269
MGI SNP Detail		 Chr5:90907348 Cpgi16042 within coordinates of
Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 122 bp downstream
 SNP G/T T T T G G G G G G G G T G T T
rs29545924
MGI SNP Detail		 Chr5:90907461 Cpgi16042 within coordinates of
Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 235 bp downstream
 SNP C/T T T T C C C T C C C T C C T
rs33703214
MGI SNP Detail		 Chr5:90907508 Cpgi16042 within coordinates of
Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 282 bp downstream
 SNP A/G G G A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31723270
MGI SNP Detail		 Chr5:90907711 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 485 bp downstream
 SNP A/G G G G G A A A G A A A A A A G A A G
rs31723271
MGI SNP Detail		 Chr5:90908315 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1089 bp downstream
 SNP A/C C C C C C C C C C C C C C A C
rs31723272
MGI SNP Detail		 Chr5:90908406 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1180 bp downstream
 SNP G/T T T T G G G T T
rs31723273
MGI SNP Detail		 Chr5:90908431 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1205 bp downstream
 SNP A/G A A A A A A A A A A A A A G A
rs586095689
MGI SNP Detail		 Chr5:90908660 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1434 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579986432
MGI SNP Detail		 Chr5:90908674 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1448 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs586767821
MGI SNP Detail		 Chr5:90908675 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1449 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs31723684
MGI SNP Detail		 Chr5:90908827 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1601 bp downstream
 SNP A/C A A A A C C C A C C C A C A
rs31723685
MGI SNP Detail		 Chr5:90908839 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1613 bp downstream
 SNP A/G A A A A G G G G G G G G A G A
rs31723686
MGI SNP Detail		 Chr5:90908892 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1666 bp downstream
 SNP C/T C C C C C C C C C C C C C T C
rs33609328
MGI SNP Detail		 Chr5:90908958 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1732 bp downstream
 SNP A/G A A A G G G
rs31723687
MGI SNP Detail		 Chr5:90908966 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1740 bp downstream
 SNP C/T C C C C T C T T C T T C
rs52446990
MGI SNP Detail		 Chr5:90909120 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1894 bp downstream
 SNP C/T T C C
rs52349656
MGI SNP Detail		 Chr5:90909147 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1921 bp downstream
 SNP A/C A C C C
rs31723688
MGI SNP Detail		 Chr5:90909148 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1922 bp downstream
 SNP C/G C C C C G G G C G G G C C G C
rs31723689
MGI SNP Detail		 Chr5:90909201 Cxcl5 within coordinates of
Gm72413 within coordinates of
Tssr47178 1975 bp downstream
 SNP A/G G G G G G G G G G G G A G
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Showing SNP(s) 1 - 41 of 41
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory