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Mouse SNP Summary
Symbol
Name
ID 		Tssr47474
transcription start site region 47474
MGI:5975241

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Showing SNP(s) 1 - 58 of 58

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263534504
MGI SNP Detail		 Chr5:100124558 Hnrnpd within coordinates of
Tssr47474 1970 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T A T A T T T A T T A T T T A T T T A T T A A T T T
rs234189855
MGI SNP Detail		 Chr5:100124563 Hnrnpd within coordinates of
Tssr47474 1965 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241596320
MGI SNP Detail		 Chr5:100124863 Hnrnpd within coordinates of
Tssr47474 1665 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253949810
MGI SNP Detail		 Chr5:100124867 Hnrnpd within coordinates of
Tssr47474 1661 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs224616346
MGI SNP Detail		 Chr5:100124970 Hnrnpd within coordinates of
Tssr47474 1558 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243990469
MGI SNP Detail		 Chr5:100124979 Hnrnpd within coordinates of
Tssr47474 1549 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215539940
MGI SNP Detail		 Chr5:100125102 Hnrnpd within coordinates of
Tssr47474 1426 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs231860569
MGI SNP Detail		 Chr5:100125121 Hnrnpd within coordinates of
Tssr47474 1407 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258759666
MGI SNP Detail		 Chr5:100125125 Hnrnpd within coordinates of
Tssr47474 1403 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218527615
MGI SNP Detail		 Chr5:100125133 Hnrnpd within coordinates of
Tssr47474 1395 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs236753740
MGI SNP Detail		 Chr5:100125212 Hnrnpd within coordinates of
Tssr47474 1316 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254960834
MGI SNP Detail		 Chr5:100125293 Hnrnpd within coordinates of
Tssr47474 1235 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T C T T T C T T T C T T T C C T T T
rs211739102
MGI SNP Detail		 Chr5:100125294 Hnrnpd within coordinates of
Tssr47474 1234 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230432294
MGI SNP Detail		 Chr5:100125328 Hnrnpd within coordinates of
Tssr47474 1200 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250974282
MGI SNP Detail		 Chr5:100125413 Hnrnpd within coordinates of
Tssr47474 1115 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222997472
MGI SNP Detail		 Chr5:100125508 Hnrnpd within coordinates of
Tssr47474 1020 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245019414
MGI SNP Detail		 Chr5:100125603 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 925 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263343100
MGI SNP Detail		 Chr5:100125615 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 913 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225763572
MGI SNP Detail		 Chr5:100125617 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 911 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T C T T T C T T T C T T C C T T T
rs241515030
MGI SNP Detail		 Chr5:100125618 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 910 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254002747
MGI SNP Detail		 Chr5:100125619 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 909 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs224455685
MGI SNP Detail		 Chr5:100125793 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 735 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs237764148
MGI SNP Detail		 Chr5:100125810 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 718 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs262849738
MGI SNP Detail		 Chr5:100125824 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 704 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A G A A A G A A A G A A A G G A G A
rs232469521
MGI SNP Detail		 Chr5:100126106 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 422 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587524776
MGI SNP Detail		 Chr5:100126202 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 326 bp upstream
 SNP A A A A A A A A A A A A
rs581458048
MGI SNP Detail		 Chr5:100126208 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Tssr47474 320 bp upstream
 SNP A A A A A A A A A A
rs253463899
MGI SNP Detail		 Chr5:100126382 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Rr378342 within coordinates of
Tssr47472 within coordinates of
Tssr47474 146 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583199875
MGI SNP Detail		 Chr5:100126493 Cpgi16102 within coordinates of
Gm17092 within coordinates of
Hnrnpd within coordinates of
Rr378342 within coordinates of
Tssr47474 35 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs218420670
MGI SNP Detail		 Chr5:100126891 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 348 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C A C C C A C C C C C C C C C A C C C C C C C C C C C C
rs229609527
MGI SNP Detail		 Chr5:100126894 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 351 bp downstream
 SNP A/G A A A A A A A A A A A A A G A A G A A A G A A A A A A A A A G A A A A A A A G A A A
rs243869381
MGI SNP Detail		 Chr5:100126940 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 397 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs211750077
MGI SNP Detail		 Chr5:100127000 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 457 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6289138
MGI SNP Detail		 Chr5:100127106 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 563 bp downstream
 SNP C/G C G
rs261898461
MGI SNP Detail		 Chr5:100127173 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 630 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs214459378
MGI SNP Detail		 Chr5:100127202 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 659 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs6290318
MGI SNP Detail		 Chr5:100127355 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 812 bp downstream
 SNP A/G A G
rs259366205
MGI SNP Detail		 Chr5:100127363 4930524J08Rik within coordinates of
Cpgi16102 within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 820 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226036890
MGI SNP Detail		 Chr5:100127478 4930524J08Rik within coordinates of
Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 935 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs6291864
MGI SNP Detail		 Chr5:100127619 Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 1076 bp downstream
 SNP A/T A T
rs6291867
MGI SNP Detail		 Chr5:100127622 Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 1079 bp downstream
 SNP A/G G A
rs235204275
MGI SNP Detail		 Chr5:100127654 Gm17092 within coordinates of
Rr378342 within coordinates of
Tssr47474 1111 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs248112923
MGI SNP Detail		 Chr5:100127751 Gm17092 within coordinates of
Tssr47474 1208 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218748722
MGI SNP Detail		 Chr5:100127781 Gm17092 within coordinates of
Tssr47474 1238 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A A A A A A
rs237625485
MGI SNP Detail		 Chr5:100127834 Gm17092 within coordinates of
Tssr47474 1291 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265302921
MGI SNP Detail		 Chr5:100127848 Gm17092 within coordinates of
Tssr47474 1305 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs224398751
MGI SNP Detail		 Chr5:100127849 Gm17092 within coordinates of
Tssr47474 1306 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249329800
MGI SNP Detail		 Chr5:100127910 Gm17092 within coordinates of
Tssr47474 1367 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs264181837
MGI SNP Detail		 Chr5:100128120 Gm17092 within coordinates of
Tssr47474 1577 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229437407
MGI SNP Detail		 Chr5:100128136 Gm17092 within coordinates of
Tssr47474 1593 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243880675
MGI SNP Detail		 Chr5:100128137 Gm17092 within coordinates of
Tssr47474 1594 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs257108156
MGI SNP Detail		 Chr5:100128183 Gm17092 within coordinates of
Tssr47474 1640 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224681384
MGI SNP Detail		 Chr5:100128293 Gm17092 within coordinates of
Tssr47474 1750 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs250408061
MGI SNP Detail		 Chr5:100128323 Gm17092 within coordinates of
Tssr47474 1780 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214729407
MGI SNP Detail		 Chr5:100128364 Gm17092 within coordinates of
Tssr47474 1821 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237696280
MGI SNP Detail		 Chr5:100128387 Gm17092 within coordinates of
Tssr47474 1844 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257944442
MGI SNP Detail		 Chr5:100128391 Gm17092 within coordinates of
Tssr47474 1848 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216564967
MGI SNP Detail		 Chr5:100128398 Gm17092 within coordinates of
Tssr47474 1855 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 58 of 58
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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