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Mouse SNP Summary
Symbol
Name
ID
Tssr47557
transcription start site region 47557
MGI:5975324

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Showing SNP(s) 1 - 63 of 63

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239307194
MGI SNP Detail
Chr5:103571119 Tssr47557 1928 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257986729
MGI SNP Detail
Chr5:103571196 Tssr47557 1851 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227070731
MGI SNP Detail
Chr5:103571198 Tssr47557 1849 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29830497
MGI SNP Detail
Chr5:103571332 Tssr47557 1715 bp upstream
SNP G/T G G T G
rs247038998
MGI SNP Detail
Chr5:103571402 Rr123925 within coordinates of
Tssr47557 1645 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265876608
MGI SNP Detail
Chr5:103571436 Rr123925 within coordinates of
Tssr47557 1611 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A C A A A A
rs233732441
MGI SNP Detail
Chr5:103571443 Rr123925 within coordinates of
Tssr47557 1604 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs252288728
MGI SNP Detail
Chr5:103571577 Rr123925 within coordinates of
Tssr47557 1470 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212706846
MGI SNP Detail
Chr5:103571588 Rr123925 within coordinates of
Tssr47557 1459 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231372291
MGI SNP Detail
Chr5:103571657 Rr123925 within coordinates of
Tssr47557 1390 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs244571660
MGI SNP Detail
Chr5:103571664 Rr123925 within coordinates of
Tssr47557 1383 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs214454809
MGI SNP Detail
Chr5:103571839 Rr123925 within coordinates of
Tssr47557 1208 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232964080
MGI SNP Detail
Chr5:103572033 Rr123925 within coordinates of
Tssr47557 1014 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225795155
MGI SNP Detail
Chr5:103572039 Rr123925 within coordinates of
Tssr47557 1008 bp upstream
SNP C C C
rs218281342
MGI SNP Detail
Chr5:103572051 Rr123925 within coordinates of
Tssr47557 996 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29779518
MGI SNP Detail
Chr5:103572071 Rr123925 within coordinates of
Tssr47557 976 bp upstream
SNP C/T T C C T
rs261092905
MGI SNP Detail
Chr5:103572084 Rr123925 within coordinates of
Tssr47557 963 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219126420
MGI SNP Detail
Chr5:103572178 Rr123925 within coordinates of
Tssr47557 869 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239263601
MGI SNP Detail
Chr5:103572203 Rr123925 within coordinates of
Tssr47557 844 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs252430912
MGI SNP Detail
Chr5:103572255 Rr123925 within coordinates of
Tssr47557 792 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220718294
MGI SNP Detail
Chr5:103572275 Rr123925 within coordinates of
Tssr47557 772 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241018559
MGI SNP Detail
Chr5:103572288 Rr123925 within coordinates of
Tssr47557 759 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs263872864
MGI SNP Detail
Chr5:103572293 Rr123925 within coordinates of
Tssr47557 754 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234659089
MGI SNP Detail
Chr5:103572526 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 521 bp upstream
SNP A/T A A T T T T T T T T T T T T T A A T T T T T A A T T T T T T A T A T T T T A T T T T T T T T T T T T A T
rs240930830
MGI SNP Detail
Chr5:103572696 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 351 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581728200
MGI SNP Detail
Chr5:103572719 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 328 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264819865
MGI SNP Detail
Chr5:103572723 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 324 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225182024
MGI SNP Detail
Chr5:103572756 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 291 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A A C A A A A A A A C A A A A
rs244542984
MGI SNP Detail
Chr5:103572779 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 268 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs215202975
MGI SNP Detail
Chr5:103572804 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 243 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33378977
MGI SNP Detail
Chr5:103572819 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 228 bp upstream
SNP A/C A C A
rs48469436
MGI SNP Detail
Chr5:103572935 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 112 bp upstream
SNP C/T T C
rs218179069
MGI SNP Detail
Chr5:103573008 Cpgi16135 within coordinates of
Rr123925 within coordinates of
Tssr47557 39 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs33552188
MGI SNP Detail
Chr5:103573070 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 7 bp downstream
Tssr47558 within coordinates of
SNP A/C A C C A
rs255691235
MGI SNP Detail
Chr5:103573072 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 9 bp downstream
Tssr47558 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213127948
MGI SNP Detail
Chr5:103573142 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 79 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs232180444
MGI SNP Detail
Chr5:103573175 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 112 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs252399707
MGI SNP Detail
Chr5:103573181 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 118 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs221327665
MGI SNP Detail
Chr5:103573193 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 130 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246878846
MGI SNP Detail
Chr5:103573324 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 261 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263608905
MGI SNP Detail
Chr5:103573378 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 315 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226315607
MGI SNP Detail
Chr5:103573394 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 331 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs243709716
MGI SNP Detail
Chr5:103573414 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 351 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs254471306
MGI SNP Detail
Chr5:103573431 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 368 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29552013
MGI SNP Detail
Chr5:103573460 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 397 bp downstream
SNP C/T T C C C
rs238221336
MGI SNP Detail
Chr5:103573491 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 428 bp downstream
SNP A/T A A T T T T T T T T T T T T T A A T T T T T A A T T T T T T A T A T T T T A T T T T T T T T T T T A A
rs257090977
MGI SNP Detail
Chr5:103573497 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 434 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227522393
MGI SNP Detail
Chr5:103573588 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 525 bp downstream
Tssr52160 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253910784
MGI SNP Detail
Chr5:103573702 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 639 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs265941122
MGI SNP Detail
Chr5:103573739 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 676 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216358352
MGI SNP Detail
Chr5:103573892 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 829 bp downstream
SNP G G G
rs252938098
MGI SNP Detail
Chr5:103573935 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 872 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213090697
MGI SNP Detail
Chr5:103573966 Cpgi16135 within coordinates of
Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 903 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231992785
MGI SNP Detail
Chr5:103574079 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1016 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs245929160
MGI SNP Detail
Chr5:103574132 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1069 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215465359
MGI SNP Detail
Chr5:103574321 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1258 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs241524540
MGI SNP Detail
Chr5:103574326 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1263 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260582182
MGI SNP Detail
Chr5:103574436 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1373 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234363499
MGI SNP Detail
Chr5:103574711 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1648 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248630128
MGI SNP Detail
Chr5:103574723 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1660 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219139835
MGI SNP Detail
Chr5:103574733 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1670 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs238183828
MGI SNP Detail
Chr5:103575034 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1971 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257051054
MGI SNP Detail
Chr5:103575039 Ptpn13 within coordinates of
Rr123925 within coordinates of
Tssr47557 1976 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 63 of 63

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory