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Mouse SNP Summary
Symbol
Name
ID
Tssr47845
transcription start site region 47845
MGI:5975612

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46040827
MGI SNP Detail
Chr5:108775886 Gak within coordinates of
Tssr47845 1970 bp upstream
SNP A/T A A T A T A A T A T A A A A A T T
rs231717954
MGI SNP Detail
Chr5:108776000 Gak within coordinates of
Tssr47845 1856 bp upstream
SNP A/G A A A A A A A A A G A G A A A A A A A G G A G A A G A G A A A A A G A G A A A G G A A A A A G A G G G A A
rs250260545
MGI SNP Detail
Chr5:108776007 Gak within coordinates of
Tssr47845 1849 bp upstream
SNP C/T T T T T T T T T T C T C T T T T T T T C C T C T T C T C T T T T T C T C T T T C C T T T T T C T C C C T T
rs218038937
MGI SNP Detail
Chr5:108776037 Gak within coordinates of
Tssr47845 1819 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs50888219
MGI SNP Detail
Chr5:108776053 Gak within coordinates of
Tssr47845 1803 bp upstream
SNP C/G C C G G C G C G G C
rs52049321
MGI SNP Detail
Chr5:108776055 Gak within coordinates of
Tssr47845 1801 bp upstream
SNP C/T C C T
rs225175869
MGI SNP Detail
Chr5:108776112 Gak within coordinates of
Tssr47845 1744 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49663490
MGI SNP Detail
Chr5:108776115 Gak within coordinates of
Tssr47845 1741 bp upstream
SNP A/G G A G A
rs256420996
MGI SNP Detail
Chr5:108776140 Gak within coordinates of
Tssr47845 1716 bp upstream
SNP C/T C C C C C C C C C T C T C C C C C C C T T C T C C T C T C C C C C T C T C C C T T C C C C C T C C T T C C
rs219657798
MGI SNP Detail
Chr5:108776188 Gak within coordinates of
Tssr47845 1668 bp upstream
SNP C/T C C C C C C C C C T C T C C C C C C C T T C T C C T C T C C C C C T C T C C C T T C C C C C T C T T T C C
rs237079804
MGI SNP Detail
Chr5:108776196 Gak within coordinates of
Tssr47845 1660 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254279231
MGI SNP Detail
Chr5:108776204 Gak within coordinates of
Tssr47845 1652 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229467417
MGI SNP Detail
Chr5:108776219 Gak within coordinates of
Tssr47845 1637 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254222165
MGI SNP Detail
Chr5:108776279 Gak within coordinates of
Tssr47845 1577 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265859290
MGI SNP Detail
Chr5:108776307 Gak within coordinates of
Tssr47845 1549 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232194816
MGI SNP Detail
Chr5:108776433 Gak within coordinates of
Tssr47845 1423 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs256795031
MGI SNP Detail
Chr5:108776498 Gak within coordinates of
Tssr47845 1358 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs214097008
MGI SNP Detail
Chr5:108776516 Gak within coordinates of
Tssr47845 1340 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231634459
MGI SNP Detail
Chr5:108776517 Gak within coordinates of
Tssr47845 1339 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29555494
MGI SNP Detail
Chr5:108776591 Gak within coordinates of
Tssr47845 1265 bp upstream
SNP A/G A A G G A G
rs212083502
MGI SNP Detail
Chr5:108776697 Gak within coordinates of
Tssr47845 1159 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs242884566
MGI SNP Detail
Chr5:108776749 Gak within coordinates of
Tssr47845 1107 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47810069
MGI SNP Detail
Chr5:108776764 Gak within coordinates of
Tssr47845 1092 bp upstream
SNP A/G A A A A A G G A G A G A A G A
rs51977043
MGI SNP Detail
Chr5:108776782 Gak within coordinates of
Tssr47845 1074 bp upstream
SNP A/T T T T T T A A T A T A T T A T
rs50950921
MGI SNP Detail
Chr5:108776822 Gak within coordinates of
Tssr47845 1034 bp upstream
SNP C/T T T T T T C T T C T C T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250507800
MGI SNP Detail
Chr5:108776859 Gak within coordinates of
Tssr47845 997 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219438141
MGI SNP Detail
Chr5:108776876 Gak within coordinates of
Tssr47845 980 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236812697
MGI SNP Detail
Chr5:108776907 Gak within coordinates of
Tssr47845 949 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49668072
MGI SNP Detail
Chr5:108777054 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 802 bp upstream
SNP C/T C C C C C T T C T C T C C T C
rs46963443
MGI SNP Detail
Chr5:108777076 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 780 bp upstream
SNP A/T T T T T T T A T T T T T T T T
rs52048746
MGI SNP Detail
Chr5:108777198 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 658 bp upstream
SNP A/C A A A A A C C A C A C A A C A
rs263779474
MGI SNP Detail
Chr5:108777270 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 586 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs50809741
MGI SNP Detail
Chr5:108777320 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 536 bp upstream
SNP C/T C C C C C T C T C T C C T C
rs240300659
MGI SNP Detail
Chr5:108777337 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 519 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs258161082
MGI SNP Detail
Chr5:108777364 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 492 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs49468559
MGI SNP Detail
Chr5:108777491 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 365 bp upstream
SNP C/T C C C C C C T C C C C C C C C
rs244001530
MGI SNP Detail
Chr5:108777516 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 340 bp upstream
SNP C/T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs212019481
MGI SNP Detail
Chr5:108777577 Cpgi16204 within coordinates of
Gak within coordinates of
Tssr47845 279 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs233866077
MGI SNP Detail
Chr5:108777639 Cpgi16204 within coordinates of
Tssr47845 217 bp upstream
SNP C/G C C C C C C C C C G C G C C C C C C C G G C G C C G C G C C C C C G C G C C C G G C C C C C G C G G C C
rs259042861
MGI SNP Detail
Chr5:108777640 Cpgi16204 within coordinates of
Tssr47845 216 bp upstream
SNP C/G C C C C C C C C C G C G C C C C C C C G G C G C C G C G C C C C C G C G C C C G G C C C C C G C G G C C
rs216537129
MGI SNP Detail
Chr5:108777646 Cpgi16204 within coordinates of
Tssr47845 210 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239874913
MGI SNP Detail
Chr5:108777835 Cpgi16204 within coordinates of
Tmem175 within coordinates of
Tssr47845 21 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs51057645
MGI SNP Detail
Chr5:108777883 Cpgi16204 within coordinates of
Tmem175 within coordinates of
Tssr47845 within coordinates of
SNP C/T C C C C C C T C C C C C C C C
rs213847769
MGI SNP Detail
Chr5:108778111 Cpgi16204 within coordinates of
Tmem175 within coordinates of
Tssr47845 227 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230771437
MGI SNP Detail
Chr5:108778216 Tmem175 within coordinates of
Tssr47845 332 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3682429
MGI SNP Detail
Chr5:108778256 Tmem175 within coordinates of
Tssr47845 372 bp downstream
SNP A/G A G
rs227583709
MGI SNP Detail
Chr5:108778364 Tmem175 within coordinates of
Tssr47845 480 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs4137568
MGI SNP Detail
Chr5:108778399 Tmem175 within coordinates of
Tssr47845 515 bp downstream
SNP A/G G G G G G A G G G A G A G G A G
rs263489614
MGI SNP Detail
Chr5:108778451 Tmem175 within coordinates of
Tssr47845 567 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs46941222
MGI SNP Detail
Chr5:108778480 Tmem175 within coordinates of
Tssr47845 596 bp downstream
SNP A/G G G G G G G A G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240034021
MGI SNP Detail
Chr5:108778588 Tmem175 within coordinates of
Tssr47845 704 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258104867
MGI SNP Detail
Chr5:108778653 Tmem175 within coordinates of
Tssr47845 769 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs6375445
MGI SNP Detail
Chr5:108778655 Tmem175 within coordinates of
Tssr47845 771 bp downstream
SNP G/T T T T T G T G G G T G T T G T
rs48042903
MGI SNP Detail
Chr5:108778673 Tmem175 within coordinates of
Tssr47845 789 bp downstream
SNP A/G G G G G G G G G G G G G G G A
rs261262709
MGI SNP Detail
Chr5:108778750 Tmem175 within coordinates of
Tssr47845 866 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234912228
MGI SNP Detail
Chr5:108778802 Tmem175 within coordinates of
Tssr47845 918 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6376504
MGI SNP Detail
Chr5:108778834 Tmem175 within coordinates of
Tssr47845 950 bp downstream
SNP A/T A A A A A T A T T A T A T A A T A
rs217188071
MGI SNP Detail
Chr5:108778945 Tmem175 within coordinates of
Tssr47845 1061 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231524084
MGI SNP Detail
Chr5:108779018 Tmem175 within coordinates of
Tssr47845 1134 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244482301
MGI SNP Detail
Chr5:108779037 Tmem175 within coordinates of
Tssr47845 1153 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6377651
MGI SNP Detail
Chr5:108779101 Tmem175 within coordinates of
Tssr47845 1217 bp downstream
SNP A/T T T T T T A T T A T A T A T T A T
rs230891703
MGI SNP Detail
Chr5:108779269 Tmem175 within coordinates of
Tssr47845 1385 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248197665
MGI SNP Detail
Chr5:108779295 Tmem175 within coordinates of
Tssr47845 1411 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219304953
MGI SNP Detail
Chr5:108779296 Tmem175 within coordinates of
Tssr47845 1412 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242234800
MGI SNP Detail
Chr5:108779383 Tmem175 within coordinates of
Tssr47845 1499 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259826511
MGI SNP Detail
Chr5:108779393 Tmem175 within coordinates of
Tssr47845 1509 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224698477
MGI SNP Detail
Chr5:108779426 Tmem175 within coordinates of
Tssr47845 1542 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs50799865
MGI SNP Detail
Chr5:108779449 Tmem175 within coordinates of
Tssr47845 1565 bp downstream
SNP C/G C G
rs251487843
MGI SNP Detail
Chr5:108779475 Tmem175 within coordinates of
Tssr47845 1591 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583995226
MGI SNP Detail
Chr5:108779491 Tmem175 within coordinates of
Tssr47845 1607 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51908785
MGI SNP Detail
Chr5:108779509 Tmem175 within coordinates of
Tssr47845 1625 bp downstream
SNP A/T T T A T A T A T A T T T T A T
rs237847885
MGI SNP Detail
Chr5:108779602 Tmem175 within coordinates of
Tssr47845 1718 bp downstream
SNP A/G A A A A A A A A A G A G A A A A A A A G G A G A A G A G A A A A A G A G A A A G G A A A A A G A A G G A A
rs264456799
MGI SNP Detail
Chr5:108779712 Tmem175 within coordinates of
Tssr47845 1828 bp downstream
SNP A/G G G G G G G G G G G A G G G G G G G A A G A G G A G A G G G G A G A G G G A A G G G G G A G A A A G G
rs226291924
MGI SNP Detail
Chr5:108779730 Tmem175 within coordinates of
Tssr47845 1846 bp downstream
SNP A/C A A A A A A A A A A C A A A A A A A A C A C A A C A C A A A A C A C A A A C C A A A A C A C C A A
rs29764584
MGI SNP Detail
Chr5:108779823 Tmem175 within coordinates of
Tssr47845 1939 bp downstream
SNP A/T T T A A T A
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Showing SNP(s) 1 - 75 of 75

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory