About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr48237
transcription start site region 48237
MGI:5976004

<< first < prev1 next > last >>
Showing SNP(s) 1 - 46 of 46

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs387616836
MGI SNP Detail		 Chr5:115566417 Gm43231 within coordinates of
Tssr48237 1959 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T C T T
rs261038364
MGI SNP Detail		 Chr5:115566437 Gm43231 within coordinates of
Tssr48237 1939 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229561217
MGI SNP Detail		 Chr5:115566440 Gm43231 within coordinates of
Tssr48237 1936 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs248409362
MGI SNP Detail		 Chr5:115566493 Gm43231 within coordinates of
Tssr48237 1883 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263822664
MGI SNP Detail		 Chr5:115566533 Gm43231 within coordinates of
Tssr48237 1843 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232395957
MGI SNP Detail		 Chr5:115566534 Gm43231 within coordinates of
Tssr48237 1842 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251798887
MGI SNP Detail		 Chr5:115566727 Gm43231 within coordinates of
Tssr48237 1649 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6385628
MGI SNP Detail		 Chr5:115566759 Gm43231 within coordinates of
Tssr48237 1617 bp upstream
 SNP C/T C T
rs230906505
MGI SNP Detail		 Chr5:115566781 Gm43231 within coordinates of
Tssr48237 1595 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242365739
MGI SNP Detail		 Chr5:115566814 Gm43231 within coordinates of
Tssr48237 1562 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217401474
MGI SNP Detail		 Chr5:115566826 Gm43231 within coordinates of
Tssr48237 1550 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47948912
MGI SNP Detail		 Chr5:115566849 Gm43231 within coordinates of
Tssr48237 1527 bp upstream
 SNP G G
rs263311180
MGI SNP Detail		 Chr5:115566854 Gm43231 within coordinates of
Tssr48237 1522 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224206896
MGI SNP Detail		 Chr5:115566863 Gm43231 within coordinates of
Tssr48237 1513 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238897095
MGI SNP Detail		 Chr5:115566891 Gm43231 within coordinates of
Tssr48237 1485 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs6386641
MGI SNP Detail		 Chr5:115566909 Gm43231 within coordinates of
Tssr48237 1467 bp upstream
 SNP A/G A G A A G
rs46822933
MGI SNP Detail		 Chr5:115566989 Gm43231 within coordinates of
Tssr48237 1387 bp upstream
 SNP A/C C C C A
rs237019120
MGI SNP Detail		 Chr5:115567019 Gm43231 within coordinates of
Tssr48237 1357 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261005829
MGI SNP Detail		 Chr5:115567043 Gm43231 within coordinates of
Tssr48237 1333 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222286933
MGI SNP Detail		 Chr5:115567053 Gm43231 within coordinates of
Tssr48237 1323 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs580716762
MGI SNP Detail		 Chr5:115567236 Cpgi16370 within coordinates of
Gm43231 within coordinates of
Tssr48237 1140 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs52055264
MGI SNP Detail		 Chr5:115567323 Cpgi16370 within coordinates of
Gm43231 within coordinates of
Tssr48237 1053 bp upstream
 SNP A/G G G G A
rs265803934
MGI SNP Detail		 Chr5:115567472 Cpgi16370 within coordinates of
Gm43231 within coordinates of
Tssr48237 904 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232008000
MGI SNP Detail		 Chr5:115567481 Cpgi16370 within coordinates of
Gm43231 within coordinates of
Tssr48237 895 bp upstream
 SNP A/T A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A T A A A
rs256583524
MGI SNP Detail		 Chr5:115567499 Cpgi16370 within coordinates of
Gm43231 within coordinates of
Tssr48237 877 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262527680
MGI SNP Detail		 Chr5:115567880 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 496 bp upstream
 SNP A/G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G G G G
rs387179659
MGI SNP Detail		 Chr5:115567948 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 428 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G C G G
rs224582349
MGI SNP Detail		 Chr5:115568086 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 290 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C T C C C C T C C C C C T C C C C C C C C C C C
rs242442993
MGI SNP Detail		 Chr5:115568089 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 287 bp upstream
 SNP A/G G G G A G G A A A A A A A G A G G G A A G G G G A G A A G G G A A A A G A A G G A A
rs217440908
MGI SNP Detail		 Chr5:115568285 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 91 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs234364767
MGI SNP Detail		 Chr5:115568405 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 10 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs49873440
MGI SNP Detail		 Chr5:115568425 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 30 bp downstream
 SNP G/T G G G T G G T T T T T T G T G G G G T G G G G T T T G G G G T T T G T G G G G
rs52362377
MGI SNP Detail		 Chr5:115568553 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 158 bp downstream
 SNP A/G A A A G A A G G A G G G G G G A G A G A A G G G A A A G G G G A A A A G G G G A G G G A G G G
rs237001893
MGI SNP Detail		 Chr5:115568771 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 376 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261943786
MGI SNP Detail		 Chr5:115568988 Cpgi16370 within coordinates of
Msi1 within coordinates of
Tssr48237 593 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218795470
MGI SNP Detail		 Chr5:115569194 Msi1 within coordinates of
Tssr48237 799 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49418508
MGI SNP Detail		 Chr5:115569250 Msi1 within coordinates of
Tssr48237 855 bp downstream
 SNP C/T T T T C
rs51940644
MGI SNP Detail		 Chr5:115569252 Msi1 within coordinates of
Tssr48237 857 bp downstream
 SNP A/C C C C A
rs581269998
MGI SNP Detail		 Chr5:115569508 Msi1 within coordinates of
Tssr48237 1113 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33078738
MGI SNP Detail		 Chr5:115569568 Msi1 within coordinates of
Tssr48237 1173 bp downstream
 SNP C/T C C T C C T
rs248478441
MGI SNP Detail		 Chr5:115569600 Msi1 within coordinates of
Tssr48237 1205 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258357799
MGI SNP Detail		 Chr5:115569660 Msi1 within coordinates of
Tssr48237 1265 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs224639432
MGI SNP Detail		 Chr5:115569912 Msi1 within coordinates of
Tssr48237 1517 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46701323
MGI SNP Detail		 Chr5:115570184 Msi1 within coordinates of
Tssr48237 1789 bp downstream
 SNP C/G G C G
rs255823779
MGI SNP Detail		 Chr5:115570300 Msi1 within coordinates of
Tssr48237 1905 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs219261611
MGI SNP Detail		 Chr5:115570328 Msi1 within coordinates of
Tssr48237 1933 bp downstream
 SNP G/T G T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 46 of 46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory