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Mouse SNP Summary
Symbol
Name
ID 		Tssr49366
transcription start site region 49366
MGI:5977133

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580273509
MGI SNP Detail		 Chr5:137742036 Tssr49366 1977 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583140828
MGI SNP Detail		 Chr5:137742072 Tssr49366 1941 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265141439
MGI SNP Detail		 Chr5:137742154 Tssr49366 1859 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs231128283
MGI SNP Detail		 Chr5:137742237 Tssr49366 1776 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247530184
MGI SNP Detail		 Chr5:137742378 Tssr49366 1635 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs584826733
MGI SNP Detail		 Chr5:137742487 Tssr49366 1526 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578973320
MGI SNP Detail		 Chr5:137742488 Tssr49366 1525 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263442494
MGI SNP Detail		 Chr5:137742501 Tssr49366 1512 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T T T T C C C C C C C C
rs228376546
MGI SNP Detail		 Chr5:137742537 Tssr49366 1476 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248458867
MGI SNP Detail		 Chr5:137742549 Tssr49366 1464 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212075401
MGI SNP Detail		 Chr5:137742553 Tssr49366 1460 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224953389
MGI SNP Detail		 Chr5:137742738 Rr622970 within coordinates of
Tssr49366 1275 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250624788
MGI SNP Detail		 Chr5:137742837 Tssr49366 1176 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215001541
MGI SNP Detail		 Chr5:137742867 Tssr49366 1146 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs237706497
MGI SNP Detail		 Chr5:137742868 Tssr49366 1145 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257505733
MGI SNP Detail		 Chr5:137742869 Tssr49366 1144 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T T T T C C C C T C C C C
rs216074907
MGI SNP Detail		 Chr5:137742892 Tssr49366 1121 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs234457167
MGI SNP Detail		 Chr5:137742905 Tssr49366 1108 bp upstream
 SNP C/G G G G G G G G G G C G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C C C C G G G G C G G G G
rs581301824
MGI SNP Detail		 Chr5:137742922 Tssr49366 1091 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A A A A A A A
rs584449787
MGI SNP Detail		 Chr5:137742924 Tssr49366 1089 bp upstream
 SNP G/T T T T T T T T T T G T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G G G G T T T T T T T T T
rs578731602
MGI SNP Detail		 Chr5:137742928 Tssr49366 1085 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T T C C C C C C C C C
rs253249572
MGI SNP Detail		 Chr5:137742936 Tssr49366 1077 bp upstream
 SNP C/T T T T T T T T T T C T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C C C C T T T T T T T T T
rs218322517
MGI SNP Detail		 Chr5:137743048 Tssr49366 965 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237541676
MGI SNP Detail		 Chr5:137743070 Tssr49366 943 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257399757
MGI SNP Detail		 Chr5:137743133 Tssr49366 880 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223482959
MGI SNP Detail		 Chr5:137743219 Tssr49366 794 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245595956
MGI SNP Detail		 Chr5:137743236 Tssr49366 777 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs265664950
MGI SNP Detail		 Chr5:137743239 Tssr49366 774 bp upstream
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G G
rs222429614
MGI SNP Detail		 Chr5:137743249 Tssr49366 764 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A A G A A A G
rs242507046
MGI SNP Detail		 Chr5:137743281 Tssr49366 732 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs32282405
MGI SNP Detail		 Chr5:137743282 Tssr49366 731 bp upstream
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G G
rs224625862
MGI SNP Detail		 Chr5:137743292 Tssr49366 721 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs255240594
MGI SNP Detail		 Chr5:137743479 Tssr49366 534 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262751513
MGI SNP Detail		 Chr5:137743532 Rr622971 within coordinates of
Tssr49366 481 bp upstream
 SNP C/T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T T T T C C T T T T C T T T T
rs232017057
MGI SNP Detail		 Chr5:137743581 Rr622971 within coordinates of
Tssr49366 432 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253015636
MGI SNP Detail		 Chr5:137743602 Rr622971 within coordinates of
Tssr49366 411 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A A A A A A A
rs216134878
MGI SNP Detail		 Chr5:137743616 Rr622971 within coordinates of
Tssr49366 397 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A A G A A A A
rs234524456
MGI SNP Detail		 Chr5:137743626 Rr622971 within coordinates of
Tssr49366 387 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247576397
MGI SNP Detail		 Chr5:137743670 Rr622971 within coordinates of
Tssr49366 343 bp upstream
 SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G G G G A A A A G A A A A
rs212152802
MGI SNP Detail		 Chr5:137743823 Rr622971 within coordinates of
Tssr49366 190 bp upstream
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T T T T T T
rs235486526
MGI SNP Detail		 Chr5:137743830 Rr622971 within coordinates of
Tssr49366 183 bp upstream
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T T
rs262219559
MGI SNP Detail		 Chr5:137743998 Rr622971 within coordinates of
Tssr49366 15 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223810235
MGI SNP Detail		 Chr5:137744049 Rr622971 within coordinates of
Tssr49366 within coordinates of
 SNP A/T T T T T T T T T T A T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A A A A T T T A T T T T
rs240355972
MGI SNP Detail		 Chr5:137744059 Rr622971 within coordinates of
Tssr49366 within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A G A A A A
rs581876215
MGI SNP Detail		 Chr5:137744149 Rr622971 within coordinates of
Tssr49366 90 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G
rs585502806
MGI SNP Detail		 Chr5:137744588 Cpgi16849 within coordinates of
Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 529 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253860839
MGI SNP Detail		 Chr5:137744671 Cpgi16849 within coordinates of
Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 612 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs222484575
MGI SNP Detail		 Chr5:137744777 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 718 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242564206
MGI SNP Detail		 Chr5:137744799 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 740 bp downstream
 SNP G/T T T T T T T T T T G T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G G G G T T T T T T T T T
rs255775787
MGI SNP Detail		 Chr5:137745100 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1041 bp downstream
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T T C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220701889
MGI SNP Detail		 Chr5:137745235 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1176 bp downstream
Tssr49377 within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G G
rs242707413
MGI SNP Detail		 Chr5:137745480 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1421 bp downstream
 SNP G/T G G G G G G G G T G G G G G G G G G T G G T G G G G T G G G G T G G G G G G T T T T G G G G G G G G G
rs265286754
MGI SNP Detail		 Chr5:137745674 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1615 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231626154
MGI SNP Detail		 Chr5:137745683 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1624 bp downstream
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T
rs258143744
MGI SNP Detail		 Chr5:137745914 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1855 bp downstream
Tssr49381 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258855744
MGI SNP Detail		 Chr5:137745932 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1873 bp downstream
Tssr49381 within coordinates of
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G
rs229074304
MGI SNP Detail		 Chr5:137746042 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49366 1983 bp downstream
 SNP C/G C C C C C C C C C G C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G G G G C C C G C C C G
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Showing SNP(s) 1 - 57 of 57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/17/2024
MGI 6.24 		The Jackson Laboratory
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