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Mouse SNP Summary
Symbol
Name
ID
Tssr49382
transcription start site region 49382
MGI:5977149

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262219559
MGI SNP Detail
Chr5:137743998 Rr622971 within coordinates of
Tssr49382 1978 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223810235
MGI SNP Detail
Chr5:137744049 Rr622971 within coordinates of
Tssr49366 within coordinates of
Tssr49382 1927 bp upstream
SNP A/T T T T T T T T T T A T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A A A A T T T A T T T T
rs240355972
MGI SNP Detail
Chr5:137744059 Rr622971 within coordinates of
Tssr49366 within coordinates of
Tssr49382 1917 bp upstream
SNP A/G A A A A A A A A A G A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G G G A A A G A A A A
rs581876215
MGI SNP Detail
Chr5:137744149 Rr622971 within coordinates of
Tssr49382 1827 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G
rs585502806
MGI SNP Detail
Chr5:137744588 Cpgi16849 within coordinates of
Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1388 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253860839
MGI SNP Detail
Chr5:137744671 Cpgi16849 within coordinates of
Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1305 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs222484575
MGI SNP Detail
Chr5:137744777 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1199 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242564206
MGI SNP Detail
Chr5:137744799 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1177 bp upstream
SNP G/T T T T T T T T T T G T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G G G G T T T T T T T T T
rs255775787
MGI SNP Detail
Chr5:137745100 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 876 bp upstream
SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T T C C C C C C C C C
rs220701889
MGI SNP Detail
Chr5:137745235 Gm57848 within coordinates of
Rr622972 within coordinates of
Tsc22d4 within coordinates of
Tssr49377 within coordinates of
Tssr49382 741 bp upstream
SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G G
rs242707413
MGI SNP Detail
Chr5:137745480 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 496 bp upstream
SNP G/T G G G G G G G G T G G G G G G G G G T G G T G G G G T G G G G T G G G G G G T T T T G G G G G G G G G
rs265286754
MGI SNP Detail
Chr5:137745674 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 302 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231626154
MGI SNP Detail
Chr5:137745683 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 293 bp upstream
SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T
rs258143744
MGI SNP Detail
Chr5:137745914 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49381 within coordinates of
Tssr49382 62 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258855744
MGI SNP Detail
Chr5:137745932 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49381 within coordinates of
Tssr49382 44 bp upstream
SNP A/G G G G G G G G G G A G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A A A A G G G G G G G G
rs229074304
MGI SNP Detail
Chr5:137746042 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 46 bp downstream
SNP C/G C C C C C C C C C G C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G G G G C C C G C C C G
rs247637849
MGI SNP Detail
Chr5:137746216 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 220 bp downstream
SNP C/G G G G G G G G G G C G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C C C C G G G G C G G G C
rs212219035
MGI SNP Detail
Chr5:137746217 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 221 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs229373127
MGI SNP Detail
Chr5:137746265 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 269 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250764550
MGI SNP Detail
Chr5:137746274 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 278 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs215704881
MGI SNP Detail
Chr5:137746290 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 294 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238245678
MGI SNP Detail
Chr5:137746292 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 296 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs253911376
MGI SNP Detail
Chr5:137746296 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 300 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs578518172
MGI SNP Detail
Chr5:137746338 Gm57848 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 342 bp downstream
SNP C/T C C C C C C C C C T C C C C C C C C C T C C T C C C C T C C C C C C C C C C C T T T T C C C C T C C C
rs216931855
MGI SNP Detail
Chr5:137746477 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 481 bp downstream
SNP G/T T T T T T T T T T G T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G G G G T T T T T T T T G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236643110
MGI SNP Detail
Chr5:137746520 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 524 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs249397019
MGI SNP Detail
Chr5:137746665 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 669 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs221173776
MGI SNP Detail
Chr5:137746742 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 746 bp downstream
SNP A/C A A A A A A A A A C A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C C C C A A A A A A A A A
rs245641367
MGI SNP Detail
Chr5:137746781 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 785 bp downstream
SNP G/T T T T T T T T T T G T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G G G G T T T T T T T T T
rs257532625
MGI SNP Detail
Chr5:137746784 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 788 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223710853
MGI SNP Detail
Chr5:137746795 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 799 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240001215
MGI SNP Detail
Chr5:137746820 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 824 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs258937810
MGI SNP Detail
Chr5:137746843 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 847 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229134126
MGI SNP Detail
Chr5:137746880 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 884 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235749882
MGI SNP Detail
Chr5:137746888 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 892 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32282406
MGI SNP Detail
Chr5:137747241 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1245 bp downstream
SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T
rs229011506
MGI SNP Detail
Chr5:137747302 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1306 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255407112
MGI SNP Detail
Chr5:137747308 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1312 bp downstream
SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G G G G A A A A G A A A G
rs214858891
MGI SNP Detail
Chr5:137747311 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1315 bp downstream
SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T C
rs232167024
MGI SNP Detail
Chr5:137747338 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1342 bp downstream
SNP C/T T T T T T T T T T C T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T C
rs247633806
MGI SNP Detail
Chr5:137747374 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1378 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216987007
MGI SNP Detail
Chr5:137747395 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1399 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236703575
MGI SNP Detail
Chr5:137747414 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1418 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249888323
MGI SNP Detail
Chr5:137747430 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1434 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213027744
MGI SNP Detail
Chr5:137747448 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1452 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235972336
MGI SNP Detail
Chr5:137747597 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1601 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262296637
MGI SNP Detail
Chr5:137747666 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1670 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223916891
MGI SNP Detail
Chr5:137747742 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1746 bp downstream
SNP A/G A A A A A A A A A G A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G G G G A A A A A A A G
rs239665719
MGI SNP Detail
Chr5:137747760 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1764 bp downstream
SNP A/C A A A A A A A A A C A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C C C C A A A A C A A A C
rs252633134
MGI SNP Detail
Chr5:137747761 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1765 bp downstream
SNP G/T T T T T T T T T T G T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G G G G T T T T G T T T G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222639497
MGI SNP Detail
Chr5:137747787 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1791 bp downstream
SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T T C C C C C C C C C
rs235788558
MGI SNP Detail
Chr5:137747789 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1793 bp downstream
SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C C C T T T T C T T T C
rs261876602
MGI SNP Detail
Chr5:137747798 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1802 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221909266
MGI SNP Detail
Chr5:137747852 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1856 bp downstream
SNP A/C A A A A A A A A C A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C C C C A A A A C A A A C
rs243347356
MGI SNP Detail
Chr5:137747862 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1866 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265326851
MGI SNP Detail
Chr5:137747864 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1868 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227432961
MGI SNP Detail
Chr5:137747976 Gm57848 within coordinates of
Rr622975 within coordinates of
Tsc22d4 within coordinates of
Tssr49382 1980 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 57 of 57

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory