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Mouse SNP Summary
Symbol
Name
ID 		Tssr49867
transcription start site region 49867
MGI:5977634

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256912448
MGI SNP Detail		 Chr5:148894095 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1978 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227268636
MGI SNP Detail		 Chr5:148894121 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1952 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254796762
MGI SNP Detail		 Chr5:148894179 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1894 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs46535716
MGI SNP Detail		 Chr5:148894181 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1892 bp upstream
 SNP A/G A G G A
rs227833733
MGI SNP Detail		 Chr5:148894189 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1884 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48239302
MGI SNP Detail		 Chr5:148894206 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1867 bp upstream
 SNP A/G G A A G
rs216561713
MGI SNP Detail		 Chr5:148894278 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1795 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48977182
MGI SNP Detail		 Chr5:148894292 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1781 bp upstream
 SNP A/C C A A C
rs47308719
MGI SNP Detail		 Chr5:148894298 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1775 bp upstream
 SNP A/G A G G A
rs215846172
MGI SNP Detail		 Chr5:148894335 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1738 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47831786
MGI SNP Detail		 Chr5:148894346 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1727 bp upstream
 SNP C/T T C C T
rs232201205
MGI SNP Detail		 Chr5:148894380 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1693 bp upstream
 SNP A/G G A
rs262474636
MGI SNP Detail		 Chr5:148894402 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1671 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51968421
MGI SNP Detail		 Chr5:148894434 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1639 bp upstream
 SNP C/G G C C G
rs46990433
MGI SNP Detail		 Chr5:148894443 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1630 bp upstream
 SNP C/T T C C T
rs260512617
MGI SNP Detail		 Chr5:148894474 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1599 bp upstream
 SNP A/G/T T T T G G T G G T G G G T T T T T T T T T T T T T G G A T T G T G A G T T T T T A G G T G G G T T T G T G
rs222972454
MGI SNP Detail		 Chr5:148894476 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1597 bp upstream
 SNP A/T T T T A T T T T T T T T T A T T A T T A T T T A T T T T T A T T A T T
rs239456641
MGI SNP Detail		 Chr5:148894490 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1583 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs50412722
MGI SNP Detail		 Chr5:148894495 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1578 bp upstream
 SNP A/C A C C A
rs219670602
MGI SNP Detail		 Chr5:148894538 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1535 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs48317329
MGI SNP Detail		 Chr5:148894556 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1517 bp upstream
 SNP G/T T G G T
rs265194429
MGI SNP Detail		 Chr5:148894633 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1440 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227454177
MGI SNP Detail		 Chr5:148894637 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1436 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs582538176
MGI SNP Detail		 Chr5:148894662 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1411 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs586444437
MGI SNP Detail		 Chr5:148894665 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1408 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580031056
MGI SNP Detail		 Chr5:148894675 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1398 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs52583358
MGI SNP Detail		 Chr5:148894715 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1358 bp upstream
 SNP G/T G T G
rs52513692
MGI SNP Detail		 Chr5:148894754 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1319 bp upstream
 SNP A/G A G A
rs582308060
MGI SNP Detail		 Chr5:148894781 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1292 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52431105
MGI SNP Detail		 Chr5:148894783 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1290 bp upstream
 SNP A/G A G A G A
rs49471051
MGI SNP Detail		 Chr5:148894828 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1245 bp upstream
 SNP A/G G A G A G
rs260412306
MGI SNP Detail		 Chr5:148894887 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1186 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229125835
MGI SNP Detail		 Chr5:148894918 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1155 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246313816
MGI SNP Detail		 Chr5:148894939 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1134 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215904075
MGI SNP Detail		 Chr5:148894959 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr378799 within coordinates of
Tssr49867 1114 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230152582
MGI SNP Detail		 Chr5:148895008 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Tssr49867 1065 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251621244
MGI SNP Detail		 Chr5:148895047 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Tssr49867 1026 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212318657
MGI SNP Detail		 Chr5:148895091 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Tssr49867 982 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235621643
MGI SNP Detail		 Chr5:148895105 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Tssr49867 968 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51102109
MGI SNP Detail		 Chr5:148895168 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Tssr49867 905 bp upstream
 SNP C/T C T C T C
rs46424519
MGI SNP Detail		 Chr5:148895204 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 869 bp upstream
 SNP A/G A G A G A
rs46046142
MGI SNP Detail		 Chr5:148895214 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 859 bp upstream
 SNP C/T C T C T C
rs252173402
MGI SNP Detail		 Chr5:148895284 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 789 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs219724189
MGI SNP Detail		 Chr5:148895338 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 735 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247300620
MGI SNP Detail		 Chr5:148895344 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 729 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs48367295
MGI SNP Detail		 Chr5:148895369 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Gm52833 within coordinates of
Rr111639 within coordinates of
Tssr49867 704 bp upstream
 SNP C/T T C T C
rs219702065
MGI SNP Detail		 Chr5:148895403 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 670 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241725569
MGI SNP Detail		 Chr5:148895414 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 659 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260459818
MGI SNP Detail		 Chr5:148895453 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 620 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs228999506
MGI SNP Detail		 Chr5:148895500 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 573 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240429604
MGI SNP Detail		 Chr5:148895535 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 538 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs259775469
MGI SNP Detail		 Chr5:148895539 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 534 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs229965500
MGI SNP Detail		 Chr5:148895564 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 509 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs256240464
MGI SNP Detail		 Chr5:148895594 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr111639 within coordinates of
Rr124806 within coordinates of
Tssr49867 479 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
rs211980824
MGI SNP Detail		 Chr5:148895732 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 341 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229330887
MGI SNP Detail		 Chr5:148895735 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 338 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246735371
MGI SNP Detail		 Chr5:148895763 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 310 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217458269
MGI SNP Detail		 Chr5:148895764 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 309 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223564877
MGI SNP Detail		 Chr5:148895783 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 290 bp upstream
 SNP G/T G T
rs246264986
MGI SNP Detail		 Chr5:148895812 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 261 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs214523644
MGI SNP Detail		 Chr5:148895873 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 200 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237225168
MGI SNP Detail		 Chr5:148896074 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261202819
MGI SNP Detail		 Chr5:148896163 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 85 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs222073401
MGI SNP Detail		 Chr5:148896185 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Tssr49867 107 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs230320730
MGI SNP Detail		 Chr5:148896207 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 129 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C T C C C C
rs254022291
MGI SNP Detail		 Chr5:148896214 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 136 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223293021
MGI SNP Detail		 Chr5:148896231 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 153 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs259839362
MGI SNP Detail		 Chr5:148896336 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 258 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs221961258
MGI SNP Detail		 Chr5:148896348 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 270 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs52373322
MGI SNP Detail		 Chr5:148896379 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 301 bp downstream
Tssr54598 within coordinates of
 SNP A/G A A G
rs52355322
MGI SNP Detail		 Chr5:148896393 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 315 bp downstream
 SNP A/C C C A
rs587038731
MGI SNP Detail		 Chr5:148896423 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 345 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs246800670
MGI SNP Detail		 Chr5:148896428 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 350 bp downstream
 SNP C/G/T G T T T T T T G T T T C T
rs259938133
MGI SNP Detail		 Chr5:148896434 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 356 bp downstream
 SNP G/T G G G G G G T T T T T T T G G T T G T T G G T G G G T T G G
rs52226867
MGI SNP Detail		 Chr5:148896456 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 378 bp downstream
 SNP G/T T T G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246143982
MGI SNP Detail		 Chr5:148896496 1810059H22Rik within coordinates of
Cpgi17084 within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 418 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs49990054
MGI SNP Detail		 Chr5:148896553 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 475 bp downstream
 SNP A/C A A C
rs49589038
MGI SNP Detail		 Chr5:148896607 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 529 bp downstream
Tssr49869 within coordinates of
 SNP C/G C G C G
rs249340982
MGI SNP Detail		 Chr5:148896690 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 612 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213734747
MGI SNP Detail		 Chr5:148896712 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 634 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235926600
MGI SNP Detail		 Chr5:148896713 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 635 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254081486
MGI SNP Detail		 Chr5:148896715 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 637 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233396389
MGI SNP Detail		 Chr5:148896817 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 739 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs263224400
MGI SNP Detail		 Chr5:148896826 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 748 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs29579038
MGI SNP Detail		 Chr5:148896909 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 831 bp downstream
 SNP C/T T C T C
rs246754049
MGI SNP Detail		 Chr5:148896933 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 855 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs261395108
MGI SNP Detail		 Chr5:148896941 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 863 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218679847
MGI SNP Detail		 Chr5:148896942 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 864 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs33291196
MGI SNP Detail		 Chr5:148896969 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 891 bp downstream
 SNP C/T C T
rs259795706
MGI SNP Detail		 Chr5:148896970 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 892 bp downstream
 SNP A/G G G G A A G A A G A A A G G G G G G G G G G G G G A A G G G A G A G A G G G G G G A A G A A A G G G A A A
rs226905863
MGI SNP Detail		 Chr5:148896973 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 895 bp downstream
 SNP A/G A A A G G A G G A G G G A A A A A A A A A A G A A G G G A A G A G G G A A A A A G G G A G G G A G A G G G
rs246021562
MGI SNP Detail		 Chr5:148897164 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1086 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265124306
MGI SNP Detail		 Chr5:148897225 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1147 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs231055266
MGI SNP Detail		 Chr5:148897248 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1170 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253233513
MGI SNP Detail		 Chr5:148897257 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1179 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213098426
MGI SNP Detail		 Chr5:148897273 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1195 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228890395
MGI SNP Detail		 Chr5:148897280 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1202 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33087714
MGI SNP Detail		 Chr5:148897296 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1218 bp downstream
 SNP C/G G C C C
rs249181531
MGI SNP Detail		 Chr5:148897305 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1227 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583520774
MGI SNP Detail		 Chr5:148897351 1810059H22Rik within coordinates of
Gm15406 within coordinates of
Gm15409 within coordinates of
Rr124806 within coordinates of
Rr378800 within coordinates of
Tssr49867 1273 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 117
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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