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Mouse SNP Summary
Symbol
Name
ID 		Tssr49918
transcription start site region 49918
MGI:5977685

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Showing SNP(s) 1 - 51 of 51

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247329460
MGI SNP Detail		 Chr5:149557983 Hsph1 within coordinates of
Tssr49918 1982 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs213750964
MGI SNP Detail		 Chr5:149558062 Hsph1 within coordinates of
Tssr49918 1903 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239053248
MGI SNP Detail		 Chr5:149558171 Hsph1 within coordinates of
Tssr49918 1794 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255893410
MGI SNP Detail		 Chr5:149558417 Hsph1 within coordinates of
Tssr49918 1548 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs221549216
MGI SNP Detail		 Chr5:149558440 Hsph1 within coordinates of
Tssr49918 1525 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs239774623
MGI SNP Detail		 Chr5:149558457 Hsph1 within coordinates of
Tssr49918 1508 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs253396180
MGI SNP Detail		 Chr5:149558468 Hsph1 within coordinates of
Tssr49918 1497 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs222474949
MGI SNP Detail		 Chr5:149558497 Hsph1 within coordinates of
Tssr49918 1468 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238953581
MGI SNP Detail		 Chr5:149558570 Hsph1 within coordinates of
Tssr49918 1395 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs257829371
MGI SNP Detail		 Chr5:149558589 Hsph1 within coordinates of
Tssr49918 1376 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222295051
MGI SNP Detail		 Chr5:149558592 Hsph1 within coordinates of
Tssr49918 1373 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T T T A T T T T T A T T T T T T A T T T T A T T A T T A A
rs234482692
MGI SNP Detail		 Chr5:149558717 Hsph1 within coordinates of
Tssr49918 1248 bp upstream
 SNP C/T T C
rs261488556
MGI SNP Detail		 Chr5:149558802 Hsph1 within coordinates of
Tssr49918 1163 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs229155513
MGI SNP Detail		 Chr5:149558945 Hsph1 within coordinates of
Tssr49918 1020 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs247892947
MGI SNP Detail		 Chr5:149559084 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 881 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs261151565
MGI SNP Detail		 Chr5:149559127 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 838 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227205057
MGI SNP Detail		 Chr5:149559215 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 750 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs247446307
MGI SNP Detail		 Chr5:149559283 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 682 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs214393060
MGI SNP Detail		 Chr5:149559342 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 623 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G C G G G G G G C G G G G G G C G G G G
rs231018982
MGI SNP Detail		 Chr5:149559343 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 622 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs252644823
MGI SNP Detail		 Chr5:149559413 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 552 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213231821
MGI SNP Detail		 Chr5:149559518 Cpgi17098 within coordinates of
Hsph1 within coordinates of
Tssr49918 447 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6344860
MGI SNP Detail		 Chr5:149560038 Cpgi17098 within coordinates of
Tssr49918 49 bp downstream
 SNP C/T C T
rs253451484
MGI SNP Detail		 Chr5:149560174 Cpgi17098 within coordinates of
Tssr49918 185 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C A C C C C C C A C C C C C C C C C C C
rs215477759
MGI SNP Detail		 Chr5:149560199 Cpgi17098 within coordinates of
Tssr49918 210 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233808805
MGI SNP Detail		 Chr5:149560215 Cpgi17098 within coordinates of
Tssr49918 226 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251798317
MGI SNP Detail		 Chr5:149560274 Cpgi17098 within coordinates of
Tssr49918 285 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221781729
MGI SNP Detail		 Chr5:149560302 Cpgi17098 within coordinates of
Tssr49918 313 bp downstream
Tssr49920 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243745156
MGI SNP Detail		 Chr5:149560328 Cpgi17098 within coordinates of
Tssr49918 339 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs260596904
MGI SNP Detail		 Chr5:149560379 Cpgi17098 within coordinates of
Tssr49918 390 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs221521323
MGI SNP Detail		 Chr5:149560415 Cpgi17098 within coordinates of
Tssr49918 426 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585153435
MGI SNP Detail		 Chr5:149560588 Tssr49918 599 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A C A A A A A A A A A A A
rs261239724
MGI SNP Detail		 Chr5:149560825 Tssr49918 836 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227261944
MGI SNP Detail		 Chr5:149560958 Tssr49918 969 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241151350
MGI SNP Detail		 Chr5:149561038 Tssr49918 1049 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs262462414
MGI SNP Detail		 Chr5:149561181 Tssr49918 1192 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs231330828
MGI SNP Detail		 Chr5:149561206 Tssr49918 1217 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249188279
MGI SNP Detail		 Chr5:149561339 Tssr49918 1350 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs213325406
MGI SNP Detail		 Chr5:149561342 Tssr49918 1353 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs228490651
MGI SNP Detail		 Chr5:149561356 Tssr49918 1367 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs247813665
MGI SNP Detail		 Chr5:149561377 Tssr49918 1388 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215551158
MGI SNP Detail		 Chr5:149561450 Tssr49918 1461 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs233820566
MGI SNP Detail		 Chr5:149561630 Tssr49918 1641 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs262135196
MGI SNP Detail		 Chr5:149561636 Tssr49918 1647 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs213506330
MGI SNP Detail		 Chr5:149561637 Tssr49918 1648 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs238784547
MGI SNP Detail		 Chr5:149561687 Tssr49918 1698 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255261301
MGI SNP Detail		 Chr5:149561704 Tssr49918 1715 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs220719686
MGI SNP Detail		 Chr5:149561903 Tssr49918 1914 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs48748502
MGI SNP Detail		 Chr5:149561958 Tssr49918 1969 bp downstream
 SNP C/G C C C G
rs255292206
MGI SNP Detail		 Chr5:149561980 Tssr49918 1991 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220954884
MGI SNP Detail		 Chr5:149561985 Tssr49918 1996 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
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Showing SNP(s) 1 - 51 of 51
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory