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Mouse SNP Summary
Symbol
Name
ID 		Tssr50327
transcription start site region 50327
MGI:5978094

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33394429
MGI SNP Detail		 Chr5:24654713 Gm10472 within coordinates of
Tssr50327 1987 bp downstream
 SNP G/T T T G
rs229072432
MGI SNP Detail		 Chr5:24654734 Gm10472 within coordinates of
Tssr50327 1966 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257155069
MGI SNP Detail		 Chr5:24654819 Gm10472 within coordinates of
Tssr50327 1881 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs216394893
MGI SNP Detail		 Chr5:24654876 Gm10472 within coordinates of
Tssr50327 1824 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs229972923
MGI SNP Detail		 Chr5:24654904 Gm10472 within coordinates of
Tssr50327 1796 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251313411
MGI SNP Detail		 Chr5:24654915 Gm10472 within coordinates of
Tssr50327 1785 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211710271
MGI SNP Detail		 Chr5:24654935 Gm10472 within coordinates of
Tssr50327 1765 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230434900
MGI SNP Detail		 Chr5:24655009 Gm10472 within coordinates of
Tssr50327 1691 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs249235021
MGI SNP Detail		 Chr5:24655035 Gm10472 within coordinates of
Tssr50327 1665 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs217051774
MGI SNP Detail		 Chr5:24655057 Gm10472 within coordinates of
Tssr50327 1643 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240587707
MGI SNP Detail		 Chr5:24655177 Gm10472 within coordinates of
Tssr50327 1523 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263070729
MGI SNP Detail		 Chr5:24655185 Gm10472 within coordinates of
Tssr50327 1515 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33359497
MGI SNP Detail		 Chr5:24655198 Gm10472 within coordinates of
Tssr50327 1502 bp downstream
 SNP A/C A A A C C A
rs246130435
MGI SNP Detail		 Chr5:24655203 Gm10472 within coordinates of
Tssr50327 1497 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C
rs252238066
MGI SNP Detail		 Chr5:24655215 Gm10472 within coordinates of
Tssr50327 1485 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218184461
MGI SNP Detail		 Chr5:24655271 Gm10472 within coordinates of
Tssr50327 1429 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587556801
MGI SNP Detail		 Chr5:24655334 Gm10472 within coordinates of
Tssr50327 1366 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238140957
MGI SNP Detail		 Chr5:24655360 Gm10472 within coordinates of
Tssr50327 1340 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G
rs33187237
MGI SNP Detail		 Chr5:24655374 Gm10472 within coordinates of
Tssr50327 1326 bp downstream
 SNP A/G A A A A G
rs229235219
MGI SNP Detail		 Chr5:24655380 Gm10472 within coordinates of
Tssr50327 1320 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs245032863
MGI SNP Detail		 Chr5:24655402 Gm10472 within coordinates of
Tssr50327 1298 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T
rs265674366
MGI SNP Detail		 Chr5:24655430 Gm10472 within coordinates of
Tssr50327 1270 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229781463
MGI SNP Detail		 Chr5:24655444 Gm10472 within coordinates of
Tssr50327 1256 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255951690
MGI SNP Detail		 Chr5:24655548 Gm10472 within coordinates of
Tssr50327 1152 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs581624801
MGI SNP Detail		 Chr5:24655591 Gm10472 within coordinates of
Tssr50327 1109 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211846617
MGI SNP Detail		 Chr5:24655835 Gm10472 within coordinates of
Tssr50327 865 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223978791
MGI SNP Detail		 Chr5:24655930 Gm10472 within coordinates of
Tssr50327 770 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584960837
MGI SNP Detail		 Chr5:24656112 Gm10472 within coordinates of
Tssr50327 588 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246447158
MGI SNP Detail		 Chr5:24656312 Gm10472 within coordinates of
Tssr50327 388 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216992373
MGI SNP Detail		 Chr5:24656338 Gm10472 within coordinates of
Tssr50327 362 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A A A T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs243532343
MGI SNP Detail		 Chr5:24656348 Gm10472 within coordinates of
Tssr50327 352 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G G G A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs32017291
MGI SNP Detail		 Chr5:24656587 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Tssr50327 113 bp downstream
 SNP C/T T T T T T T C C T C C T C C T C
rs217450479
MGI SNP Detail		 Chr5:24656610 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Tssr50327 90 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236473133
MGI SNP Detail		 Chr5:24656700 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Tssr50327 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs252171336
MGI SNP Detail		 Chr5:24656722 Cpgi15603 within coordinates of
Tssr50327 within coordinates of
 SNP A/C/T T T T T T T T T T T T T T T T T T T T C T T C C C T T C T T T T T C T T T C T T C T T T T T T T A T T C T
rs218352959
MGI SNP Detail		 Chr5:24656723 Cpgi15603 within coordinates of
Tssr50327 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G G G T T G T T T T T G T T T G T T G T T T T T T T G T T G T
rs581111341
MGI SNP Detail		 Chr5:24656924 Cpgi15603 within coordinates of
Tssr50327 180 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs254526470
MGI SNP Detail		 Chr5:24656967 Cpgi15603 within coordinates of
Tssr45426 within coordinates of
Tssr50327 223 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226813700
MGI SNP Detail		 Chr5:24657228 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 484 bp upstream
 SNP C/T C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C C C C
rs584644085
MGI SNP Detail		 Chr5:24657291 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 547 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs247724994
MGI SNP Detail		 Chr5:24657459 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 715 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263565261
MGI SNP Detail		 Chr5:24657595 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 851 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230003654
MGI SNP Detail		 Chr5:24657625 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 881 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238308436
MGI SNP Detail		 Chr5:24657796 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1052 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253696914
MGI SNP Detail		 Chr5:24657943 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1199 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs224143664
MGI SNP Detail		 Chr5:24657961 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1217 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246382898
MGI SNP Detail		 Chr5:24657989 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1245 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G G A A A G G G G G G G G G G G A G
rs33274090
MGI SNP Detail		 Chr5:24658196 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1452 bp upstream
 SNP C/G C C G
rs231369828
MGI SNP Detail		 Chr5:24658210 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1466 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257676810
MGI SNP Detail		 Chr5:24658226 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1482 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217302523
MGI SNP Detail		 Chr5:24658246 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1502 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs238428744
MGI SNP Detail		 Chr5:24658251 Agap3 within coordinates of
Cpgi15603 within coordinates of
Tssr50327 1507 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs51983238
MGI SNP Detail		 Chr5:24658345 Agap3 within coordinates of
Tssr50327 1601 bp upstream
 SNP C/T T C
rs212218487
MGI SNP Detail		 Chr5:24658584 Agap3 within coordinates of
Tssr50327 1840 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230826419
MGI SNP Detail		 Chr5:24658637 Agap3 within coordinates of
Tssr50327 1893 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs254620683
MGI SNP Detail		 Chr5:24658660 Agap3 within coordinates of
Tssr50327 1916 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 56 of 56
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory