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Mouse SNP Summary
Symbol
Name
ID 		Tssr50355
transcription start site region 50355
MGI:5978122

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47307783
MGI SNP Detail		 Chr5:24825644 Smarcd3 within coordinates of
Tssr50355 2000 bp downstream
 SNP A/G G A
rs236708480
MGI SNP Detail		 Chr5:24825688 Smarcd3 within coordinates of
Tssr50355 1956 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260633653
MGI SNP Detail		 Chr5:24825698 Smarcd3 within coordinates of
Tssr50355 1946 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220844353
MGI SNP Detail		 Chr5:24825769 Smarcd3 within coordinates of
Tssr50355 1875 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50553289
MGI SNP Detail		 Chr5:24825773 Smarcd3 within coordinates of
Tssr50355 1871 bp downstream
 SNP A/G G A
rs254672284
MGI SNP Detail		 Chr5:24825783 Smarcd3 within coordinates of
Tssr50355 1861 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs223735078
MGI SNP Detail		 Chr5:24825785 Smarcd3 within coordinates of
Tssr50355 1859 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C C C G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs48723612
MGI SNP Detail		 Chr5:24825839 Smarcd3 within coordinates of
Tssr50355 1805 bp downstream
 SNP A/G A G
rs51323914
MGI SNP Detail		 Chr5:24825901 Smarcd3 within coordinates of
Tssr50355 1743 bp downstream
 SNP A/C A C
rs230286193
MGI SNP Detail		 Chr5:24825908 Smarcd3 within coordinates of
Tssr50355 1736 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs45683086
MGI SNP Detail		 Chr5:24825984 Smarcd3 within coordinates of
Tssr50355 1660 bp downstream
 SNP A/G A G
rs264677483
MGI SNP Detail		 Chr5:24826017 Smarcd3 within coordinates of
Tssr50355 1627 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228681039
MGI SNP Detail		 Chr5:24826033 Smarcd3 within coordinates of
Tssr50355 1611 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs246708406
MGI SNP Detail		 Chr5:24826053 Smarcd3 within coordinates of
Tssr50355 1591 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217218576
MGI SNP Detail		 Chr5:24826150 Smarcd3 within coordinates of
Tssr50355 1494 bp downstream
 SNP C/T T T C C C C C T C C C C C C C C C C C C T C C C C C C C T C T C C C C C C C C C C C C C C C C T C C C T
rs226776115
MGI SNP Detail		 Chr5:24826171 Smarcd3 within coordinates of
Tssr50355 1473 bp downstream
 SNP C/T T T T C C C C C T C C C C C C C C C C C C T C C C C C C C T C T C C C C C C C C C C C C C C C C T C C C T
rs245774100
MGI SNP Detail		 Chr5:24826202 Smarcd3 within coordinates of
Tssr50355 1442 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213438459
MGI SNP Detail		 Chr5:24826207 Smarcd3 within coordinates of
Tssr50355 1437 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs47627176
MGI SNP Detail		 Chr5:24826246 Smarcd3 within coordinates of
Tssr50355 1398 bp downstream
 SNP G/T G T T
rs255149926
MGI SNP Detail		 Chr5:24826247 Smarcd3 within coordinates of
Tssr50355 1397 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47209537
MGI SNP Detail		 Chr5:24826248 Smarcd3 within coordinates of
Tssr50355 1396 bp downstream
 SNP G/T G T G
rs49295520
MGI SNP Detail		 Chr5:24826268 Smarcd3 within coordinates of
Tssr50355 1376 bp downstream
 SNP A/G G A A
rs583298345
MGI SNP Detail		 Chr5:24826332 Smarcd3 within coordinates of
Tssr50355 1312 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49085612
MGI SNP Detail		 Chr5:24826345 Smarcd3 within coordinates of
Tssr50355 1299 bp downstream
 SNP C/T C T T
rs50722121
MGI SNP Detail		 Chr5:24826376 Smarcd3 within coordinates of
Tssr50355 1268 bp downstream
 SNP C/T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51434147
MGI SNP Detail		 Chr5:24826395 Smarcd3 within coordinates of
Tssr50355 1249 bp downstream
 SNP C/T C C T
rs48904553
MGI SNP Detail		 Chr5:24826397 Smarcd3 within coordinates of
Tssr50355 1247 bp downstream
 SNP C/T T C C
rs222714260
MGI SNP Detail		 Chr5:24826416 Smarcd3 within coordinates of
Tssr50355 1228 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247096554
MGI SNP Detail		 Chr5:24826504 Smarcd3 within coordinates of
Tssr50355 1140 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261550189
MGI SNP Detail		 Chr5:24826675 Smarcd3 within coordinates of
Tssr50355 969 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240811840
MGI SNP Detail		 Chr5:24826769 Smarcd3 within coordinates of
Tssr50355 875 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259887411
MGI SNP Detail		 Chr5:24826867 Smarcd3 within coordinates of
Tssr50355 777 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G A A G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs49090712
MGI SNP Detail		 Chr5:24826960 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 684 bp downstream
 SNP C/T T T T C C C C C T C C C C C C C C C C C C T C C C C C C C T C T C C C C C C C C C C C C C C C C C C C C T
rs46130988
MGI SNP Detail		 Chr5:24827027 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 617 bp downstream
 SNP G/T T T T G G G G G T G G G G G G G G G G G G T G G G G G G G T G T G G G G G G G G G G G G G G G G G G G G T
rs214076353
MGI SNP Detail		 Chr5:24827054 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 590 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230675633
MGI SNP Detail		 Chr5:24827064 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 580 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33670736
MGI SNP Detail		 Chr5:24827114 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 530 bp downstream
 SNP C/T C T T C
rs212478274
MGI SNP Detail		 Chr5:24827115 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 529 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G A A G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs33217667
MGI SNP Detail		 Chr5:24827192 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 452 bp downstream
 SNP A/G G A A
rs254813310
MGI SNP Detail		 Chr5:24827204 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 440 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217740244
MGI SNP Detail		 Chr5:24827239 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 405 bp downstream
 SNP C/T C C C T T T T T C T T T T T T T T T T C T C C C C T T C T C T C T C T T T T T T C T T T T T T T C T T T C
rs51636078
MGI SNP Detail		 Chr5:24827273 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 371 bp downstream
 SNP G/T G G T
rs259700281
MGI SNP Detail		 Chr5:24827395 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 249 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222543051
MGI SNP Detail		 Chr5:24827436 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 208 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237150867
MGI SNP Detail		 Chr5:24827469 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 175 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261069858
MGI SNP Detail		 Chr5:24827478 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 166 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221640344
MGI SNP Detail		 Chr5:24827501 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 143 bp downstream
 SNP A/G A A A G G G G G A G G G G G G G G G G G G A G G G G G G G A G A G G G G G G G G G G G G G G G G G G G G G
rs240866039
MGI SNP Detail		 Chr5:24827573 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 71 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs259945661
MGI SNP Detail		 Chr5:24827734 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 83 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33622691
MGI SNP Detail		 Chr5:24827751 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 100 bp upstream
 SNP C/T C C C C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240020326
MGI SNP Detail		 Chr5:24827757 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 106 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33231928
MGI SNP Detail		 Chr5:24827803 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 152 bp upstream
 SNP A/G G G G A
rs231055761
MGI SNP Detail		 Chr5:24827806 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 155 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51024272
MGI SNP Detail		 Chr5:24827884 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 233 bp upstream
 SNP G/T G T
rs264813800
MGI SNP Detail		 Chr5:24827914 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 263 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228425030
MGI SNP Detail		 Chr5:24828078 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 427 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50253716
MGI SNP Detail		 Chr5:24828093 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 442 bp upstream
 SNP T T T
rs214876986
MGI SNP Detail		 Chr5:24828112 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 461 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33345025
MGI SNP Detail		 Chr5:24828128 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 477 bp upstream
 SNP A/T T T T A
rs258761278
MGI SNP Detail		 Chr5:24828141 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 490 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214138285
MGI SNP Detail		 Chr5:24828160 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 509 bp upstream
 SNP A/G A A A G G G G G A G G G G G G G G G G G G A G G G G G G G A G A G G G G G G G G G G G G G G G G G G G G G
rs33647013
MGI SNP Detail		 Chr5:24828229 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 578 bp upstream
 SNP A/G A A A G
rs255768852
MGI SNP Detail		 Chr5:24828261 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 610 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218771544
MGI SNP Detail		 Chr5:24828271 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 620 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs234556237
MGI SNP Detail		 Chr5:24828304 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 653 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs253222807
MGI SNP Detail		 Chr5:24828433 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 782 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220857841
MGI SNP Detail		 Chr5:24828440 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 789 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239982096
MGI SNP Detail		 Chr5:24828603 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 952 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs265078197
MGI SNP Detail		 Chr5:24828620 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 969 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223236755
MGI SNP Detail		 Chr5:24828801 Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 1150 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243799902
MGI SNP Detail		 Chr5:24829339 Cpgi15616 within coordinates of
Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 1688 bp upstream
 SNP C/T T T T C C C C C T C C C C C C C C C C C C T C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C
rs46185966
MGI SNP Detail		 Chr5:24829570 Cpgi15616 within coordinates of
Gm71653 within coordinates of
Smarcd3 within coordinates of
Tssr50355 1919 bp upstream
 SNP C C
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Showing SNP(s) 1 - 72 of 72
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory