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Mouse SNP Summary
Symbol
Name
ID 		Tssr50625
transcription start site region 50625
MGI:5978392

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Showing SNP(s) 1 - 45 of 45

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252054315
MGI SNP Detail		 Chr5:34152016 Tssr50625 1864 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222508767
MGI SNP Detail		 Chr5:34152061 Tssr50625 1819 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C G C C C C C C G C C C C C C C G C C C C
rs579931436
MGI SNP Detail		 Chr5:34152103 Tssr50625 1777 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240877188
MGI SNP Detail		 Chr5:34152121 Tssr50625 1759 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33445636
MGI SNP Detail		 Chr5:34152223 Tssr50625 1657 bp downstream
 SNP A/C A A C A C
rs226933630
MGI SNP Detail		 Chr5:34152267 Tssr50625 1613 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G G A G G G G
rs247098120
MGI SNP Detail		 Chr5:34152285 Tssr50625 1595 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248648015
MGI SNP Detail		 Chr5:34152306 Tssr50625 1574 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583078520
MGI SNP Detail		 Chr5:34152365 Tssr50625 1515 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217690371
MGI SNP Detail		 Chr5:34152408 Tssr50625 1472 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238027689
MGI SNP Detail		 Chr5:34152420 Tssr50625 1460 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256752469
MGI SNP Detail		 Chr5:34152449 Tssr50625 1431 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230416647
MGI SNP Detail		 Chr5:34152553 Tssr50625 1327 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249526581
MGI SNP Detail		 Chr5:34152581 Tssr50625 1299 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263308852
MGI SNP Detail		 Chr5:34152591 Tssr50625 1289 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235186845
MGI SNP Detail		 Chr5:34152608 Tssr50625 1272 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs248165338
MGI SNP Detail		 Chr5:34152792 Cpgi15746 within coordinates of
Tssr50625 1088 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47749918
MGI SNP Detail		 Chr5:34152918 Cpgi15746 within coordinates of
Rr609649 within coordinates of
Tssr50625 962 bp downstream
 SNP A/T T T A
rs33063212
MGI SNP Detail		 Chr5:34152964 Cpgi15746 within coordinates of
Rr609649 within coordinates of
Tssr50625 916 bp downstream
 SNP C/T C T C T
rs245764401
MGI SNP Detail		 Chr5:34153034 Cpgi15746 within coordinates of
Rr609649 within coordinates of
Tssr50625 846 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29552089
MGI SNP Detail		 Chr5:34153050 Cpgi15746 within coordinates of
Rr609649 within coordinates of
Tssr50625 830 bp downstream
 SNP A/G G A G A
rs238659371
MGI SNP Detail		 Chr5:34153093 Cpgi15746 within coordinates of
Rr609649 within coordinates of
Tssr50625 787 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262849002
MGI SNP Detail		 Chr5:34153366 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr45846 within coordinates of
Tssr50625 514 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
rs218984671
MGI SNP Detail		 Chr5:34153646 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 234 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234138958
MGI SNP Detail		 Chr5:34153709 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 171 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248712311
MGI SNP Detail		 Chr5:34153776 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 104 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217726074
MGI SNP Detail		 Chr5:34153787 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 93 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238068220
MGI SNP Detail		 Chr5:34153812 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 68 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256754744
MGI SNP Detail		 Chr5:34153899 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 7 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222677059
MGI SNP Detail		 Chr5:34153922 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 30 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246853105
MGI SNP Detail		 Chr5:34154085 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr45855 within coordinates of
Tssr50625 193 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs265585724
MGI SNP Detail		 Chr5:34154217 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 325 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234153964
MGI SNP Detail		 Chr5:34154532 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 640 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242221583
MGI SNP Detail		 Chr5:34154586 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 694 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs580341418
MGI SNP Detail		 Chr5:34154605 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 713 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs256953804
MGI SNP Detail		 Chr5:34154610 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 718 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs224377727
MGI SNP Detail		 Chr5:34154629 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 737 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs245838533
MGI SNP Detail		 Chr5:34154704 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 812 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs213839924
MGI SNP Detail		 Chr5:34154813 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 921 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233114070
MGI SNP Detail		 Chr5:34155051 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 1159 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252263423
MGI SNP Detail		 Chr5:34155317 Cpgi15746 within coordinates of
Nat8l within coordinates of
Tssr50625 1425 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219025572
MGI SNP Detail		 Chr5:34155593 Nat8l within coordinates of
Tssr50625 1701 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234176619
MGI SNP Detail		 Chr5:34155672 Nat8l within coordinates of
Tssr50625 1780 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242916221
MGI SNP Detail		 Chr5:34155688 Nat8l within coordinates of
Tssr50625 1796 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211882635
MGI SNP Detail		 Chr5:34155795 Nat8l within coordinates of
Tssr50625 1903 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 45 of 45
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory