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Mouse SNP Summary
Symbol
Name
ID 		Tssr50982
transcription start site region 50982
MGI:5978749

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Showing SNP(s) 1 - 32 of 32

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222560277
MGI SNP Detail		 Chr5:52271188 Cpgi15852 within coordinates of
Tssr50982 1959 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A G G G G A A A A A G A A A A
rs232798093
MGI SNP Detail		 Chr5:52271233 Cpgi15852 within coordinates of
Tssr50982 1914 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251939012
MGI SNP Detail		 Chr5:52271300 Cpgi15852 within coordinates of
Tssr50982 1847 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A G G G G A A A A A A A A A A
rs222252310
MGI SNP Detail		 Chr5:52271656 Cpgi15852 within coordinates of
Tssr50982 1491 bp downstream
 SNP A/G G G A A A A A A A A A A A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A
rs246528267
MGI SNP Detail		 Chr5:52271986 Cpgi15852 within coordinates of
Gm71495 within coordinates of
Tssr50982 1161 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs261319315
MGI SNP Detail		 Chr5:52272017 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Tssr50982 1130 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220855307
MGI SNP Detail		 Chr5:52272154 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 993 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241800634
MGI SNP Detail		 Chr5:52272179 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 968 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs261457462
MGI SNP Detail		 Chr5:52272187 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 960 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs227661340
MGI SNP Detail		 Chr5:52272362 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 785 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs247591320
MGI SNP Detail		 Chr5:52272786 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 361 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G A A A A G G G G G G G G G G
rs257955565
MGI SNP Detail		 Chr5:52273001 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm71495 within coordinates of
Rr611385 within coordinates of
Tssr50982 146 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230955840
MGI SNP Detail		 Chr5:52273231 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 41 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs252840361
MGI SNP Detail		 Chr5:52273614 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 424 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212911263
MGI SNP Detail		 Chr5:52273617 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 427 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234238589
MGI SNP Detail		 Chr5:52273650 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 460 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247635764
MGI SNP Detail		 Chr5:52273791 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217213909
MGI SNP Detail		 Chr5:52273808 Cpgi15852 within coordinates of
Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 618 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C T T T T C C C C C T C C C T
rs232769127
MGI SNP Detail		 Chr5:52274001 Gm40302 within coordinates of
Gm43177 within coordinates of
Rr611387 within coordinates of
Tssr50982 811 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251910724
MGI SNP Detail		 Chr5:52274203 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1013 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214228562
MGI SNP Detail		 Chr5:52274291 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1101 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs236660556
MGI SNP Detail		 Chr5:52274409 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1219 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T G G G G T T T T T T T T T T
rs260590907
MGI SNP Detail		 Chr5:52274441 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1251 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221078092
MGI SNP Detail		 Chr5:52274511 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1321 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241770917
MGI SNP Detail		 Chr5:52274517 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1327 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G A A A G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255060061
MGI SNP Detail		 Chr5:52274626 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1436 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G A A A A G G G G G G G G G G
rs221241297
MGI SNP Detail		 Chr5:52274680 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1490 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241549539
MGI SNP Detail		 Chr5:52274681 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1491 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs262560689
MGI SNP Detail		 Chr5:52274754 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1564 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C T T T T C C C C C C C C C C
rs231556590
MGI SNP Detail		 Chr5:52275046 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1856 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241673926
MGI SNP Detail		 Chr5:52275049 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1859 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A T T T T A A A A A A A A A A
rs264872762
MGI SNP Detail		 Chr5:52275099 Gm40302 within coordinates of
Gm43177 within coordinates of
Tssr50982 1909 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 32 of 32
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory