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Mouse SNP Summary
Symbol
Name
ID 		Tssr52746
transcription start site region 52746
MGI:5980513

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246029539
MGI SNP Detail		 Chr5:115088802 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1975 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215386487
MGI SNP Detail		 Chr5:115088937 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1840 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G A
rs232275839
MGI SNP Detail		 Chr5:115088946 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1831 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C A
rs243748268
MGI SNP Detail		 Chr5:115088950 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1827 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212766490
MGI SNP Detail		 Chr5:115088953 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1824 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236026914
MGI SNP Detail		 Chr5:115088975 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1802 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260871237
MGI SNP Detail		 Chr5:115088979 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1798 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226122056
MGI SNP Detail		 Chr5:115089117 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1660 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585696765
MGI SNP Detail		 Chr5:115089144 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1633 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs238376582
MGI SNP Detail		 Chr5:115089239 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1538 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32138747
MGI SNP Detail		 Chr5:115089309 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1468 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220101160
MGI SNP Detail		 Chr5:115089360 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1417 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238616557
MGI SNP Detail		 Chr5:115089369 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1408 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G A G G G G
rs257865026
MGI SNP Detail		 Chr5:115089374 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1403 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221996999
MGI SNP Detail		 Chr5:115089376 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1401 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583235934
MGI SNP Detail		 Chr5:115089395 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1382 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244321331
MGI SNP Detail		 Chr5:115089401 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1376 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T G
rs586671315
MGI SNP Detail		 Chr5:115089405 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1372 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264617065
MGI SNP Detail		 Chr5:115089407 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1370 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs234456825
MGI SNP Detail		 Chr5:115089438 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1339 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32138748
MGI SNP Detail		 Chr5:115089454 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1323 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257305558
MGI SNP Detail		 Chr5:115089459 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1318 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226308918
MGI SNP Detail		 Chr5:115089483 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1294 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243996234
MGI SNP Detail		 Chr5:115089493 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1284 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs213414934
MGI SNP Detail		 Chr5:115089500 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1277 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234564717
MGI SNP Detail		 Chr5:115089535 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1242 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259986546
MGI SNP Detail		 Chr5:115089546 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1231 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218018066
MGI SNP Detail		 Chr5:115089569 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1208 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580876208
MGI SNP Detail		 Chr5:115089714 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1063 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584035057
MGI SNP Detail		 Chr5:115089717 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1060 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C
rs587593437
MGI SNP Detail		 Chr5:115089718 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1059 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A
rs32138749
MGI SNP Detail		 Chr5:115089773 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 1004 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252543751
MGI SNP Detail		 Chr5:115089852 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 925 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219971182
MGI SNP Detail		 Chr5:115089859 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 918 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231215657
MGI SNP Detail		 Chr5:115089932 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 845 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250218018
MGI SNP Detail		 Chr5:115089934 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 843 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219787552
MGI SNP Detail		 Chr5:115089950 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 827 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241584233
MGI SNP Detail		 Chr5:115090010 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 767 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs266211482
MGI SNP Detail		 Chr5:115090013 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 764 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs226230381
MGI SNP Detail		 Chr5:115090040 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 737 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240404647
MGI SNP Detail		 Chr5:115090090 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 687 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257593773
MGI SNP Detail		 Chr5:115090130 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 647 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs581514952
MGI SNP Detail		 Chr5:115090160 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 617 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584716087
MGI SNP Detail		 Chr5:115090161 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 616 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs226168222
MGI SNP Detail		 Chr5:115090172 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 605 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237625372
MGI SNP Detail		 Chr5:115090173 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 604 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs262045655
MGI SNP Detail		 Chr5:115090309 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 468 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228424516
MGI SNP Detail		 Chr5:115090368 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 409 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254627911
MGI SNP Detail		 Chr5:115090381 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 396 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs217952603
MGI SNP Detail		 Chr5:115090410 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 367 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32138750
MGI SNP Detail		 Chr5:115090425 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 352 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs246445773
MGI SNP Detail		 Chr5:115090474 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 303 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214341755
MGI SNP Detail		 Chr5:115090514 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 263 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231298550
MGI SNP Detail		 Chr5:115090539 Cpgi16343 within coordinates of
Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 238 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261263818
MGI SNP Detail		 Chr5:115090562 Cpgi16343 within coordinates of
Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 215 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs211868803
MGI SNP Detail		 Chr5:115090593 Cpgi16343 within coordinates of
Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 184 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32138751
MGI SNP Detail		 Chr5:115090616 Cpgi16343 within coordinates of
Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 161 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261133647
MGI SNP Detail		 Chr5:115090777 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586867849
MGI SNP Detail		 Chr5:115090864 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 84 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226519427
MGI SNP Detail		 Chr5:115090978 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 198 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240270798
MGI SNP Detail		 Chr5:115090983 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 203 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs580933522
MGI SNP Detail		 Chr5:115091042 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 262 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs251583331
MGI SNP Detail		 Chr5:115091049 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 269 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs220341854
MGI SNP Detail		 Chr5:115091116 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 336 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237685213
MGI SNP Detail		 Chr5:115091150 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 370 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264877380
MGI SNP Detail		 Chr5:115091167 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 387 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32138752
MGI SNP Detail		 Chr5:115091337 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 557 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G C
rs33758643
MGI SNP Detail		 Chr5:115091405 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 625 bp upstream
 SNP A/G A G A A G
rs33234601
MGI SNP Detail		 Chr5:115091425 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 645 bp upstream
 SNP A/G A G A A G
rs228013550
MGI SNP Detail		 Chr5:115091605 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 825 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246321396
MGI SNP Detail		 Chr5:115091614 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 834 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33562811
MGI SNP Detail		 Chr5:115091619 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 839 bp upstream
 SNP A/T A A T T A A T
rs33600326
MGI SNP Detail		 Chr5:115091667 Gm71622 within coordinates of
Hnf1a within coordinates of
Rr126273 within coordinates of
Tssr52746 887 bp upstream
 SNP C/T C C T T C C T
rs249605869
MGI SNP Detail		 Chr5:115091830 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1050 bp upstream
 SNP C/T C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs211758934
MGI SNP Detail		 Chr5:115091842 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1062 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239928493
MGI SNP Detail		 Chr5:115091845 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1065 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263660238
MGI SNP Detail		 Chr5:115091863 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1083 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215683904
MGI SNP Detail		 Chr5:115091885 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1105 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578359873
MGI SNP Detail		 Chr5:115091995 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1215 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33142674
MGI SNP Detail		 Chr5:115091997 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1217 bp upstream
 SNP C/T C C T C C T
rs32138753
MGI SNP Detail		 Chr5:115092107 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1327 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs33239383
MGI SNP Detail		 Chr5:115092256 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1476 bp upstream
 SNP C/T C C T C C C
rs237948939
MGI SNP Detail		 Chr5:115092268 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1488 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs256403778
MGI SNP Detail		 Chr5:115092346 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1566 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220210023
MGI SNP Detail		 Chr5:115092433 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1653 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs248370961
MGI SNP Detail		 Chr5:115092498 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1718 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265976717
MGI SNP Detail		 Chr5:115092602 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1822 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222026688
MGI SNP Detail		 Chr5:115092607 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1827 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29726493
MGI SNP Detail		 Chr5:115092634 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1854 bp upstream
 SNP A/G A A G G A
rs258207240
MGI SNP Detail		 Chr5:115092636 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1856 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs225785020
MGI SNP Detail		 Chr5:115092641 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1861 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs254174607
MGI SNP Detail		 Chr5:115092670 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1890 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261449476
MGI SNP Detail		 Chr5:115092676 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1896 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs234616593
MGI SNP Detail		 Chr5:115092684 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1904 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582652023
MGI SNP Detail		 Chr5:115092736 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1956 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585926305
MGI SNP Detail		 Chr5:115092745 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1965 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs580149657
MGI SNP Detail		 Chr5:115092747 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1967 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A G A A A A
rs582156839
MGI SNP Detail		 Chr5:115092756 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1976 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32139594
MGI SNP Detail		 Chr5:115092772 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1992 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C C C C C C C C C T C C C C
rs215741653
MGI SNP Detail		 Chr5:115092775 Gm71622 within coordinates of
Hnf1a within coordinates of
Tssr52746 1995 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
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Showing SNP(s) 1 - 100 of 100
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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