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Mouse SNP Summary
Symbol
Name
ID 		Tssr53180
transcription start site region 53180
MGI:5980947

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219011418
MGI SNP Detail		 Chr5:123126626 Cpgi16565 within coordinates of
Gm44574 within coordinates of
Kdm2b within coordinates of
Rr124330 within coordinates of
Tssr53180 1970 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33426123
MGI SNP Detail		 Chr5:123126664 Cpgi16565 within coordinates of
Gm44574 within coordinates of
Kdm2b within coordinates of
Rr124330 within coordinates of
Tssr53180 1932 bp downstream
 SNP G/T T G G T G
rs33743920
MGI SNP Detail		 Chr5:123126706 Cpgi16565 within coordinates of
Gm44574 within coordinates of
Kdm2b within coordinates of
Rr124330 within coordinates of
Tssr53180 1890 bp downstream
 SNP C/T C T T C T
rs29526918
MGI SNP Detail		 Chr5:123127030 Gm44574 within coordinates of
Kdm2b within coordinates of
Rr124330 within coordinates of
Tssr53180 1566 bp downstream
 SNP A/C C A A C A
rs29564272
MGI SNP Detail		 Chr5:123127697 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 899 bp downstream
 SNP C/T T T T C T C C C C C C T C C C C C T
rs38883970
MGI SNP Detail		 Chr5:123128004 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr48737 within coordinates of
Tssr53180 592 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs29509984
MGI SNP Detail		 Chr5:123128033 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 563 bp downstream
 SNP C/T C C C T C T T T T T T T C T T C T T C
rs29634030
MGI SNP Detail		 Chr5:123128059 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 537 bp downstream
 SNP A/G A A A G A G G G G G G A G G A G G A
rs254466826
MGI SNP Detail		 Chr5:123128129 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 467 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29630121
MGI SNP Detail		 Chr5:123128252 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 344 bp downstream
 SNP A/G A A A G G
rs33240424
MGI SNP Detail		 Chr5:123128310 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 286 bp downstream
 SNP C/G G G G C G C C C G C C C G C C G C C G
rs246981511
MGI SNP Detail		 Chr5:123128322 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 274 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264571289
MGI SNP Detail		 Chr5:123128348 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53175 within coordinates of
Tssr53180 248 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs232416009
MGI SNP Detail		 Chr5:123128488 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 108 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29567595
MGI SNP Detail		 Chr5:123128496 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 100 bp downstream
 SNP C/T C C C T C T T T C T T T C T T T C T T C
rs29675713
MGI SNP Detail		 Chr5:123128620 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 within coordinates of
 SNP A/G A A G A G
rs33241350
MGI SNP Detail		 Chr5:123128757 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 121 bp upstream
 SNP A/T T T A A
rs29568025
MGI SNP Detail		 Chr5:123128758 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 122 bp upstream
 SNP A/T T T A A T A
rs213079748
MGI SNP Detail		 Chr5:123128911 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 275 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235710565
MGI SNP Detail		 Chr5:123128914 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 278 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264298972
MGI SNP Detail		 Chr5:123128984 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 348 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224086797
MGI SNP Detail		 Chr5:123128989 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 353 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs240794280
MGI SNP Detail		 Chr5:123129030 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 394 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257103025
MGI SNP Detail		 Chr5:123129034 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 398 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs223104871
MGI SNP Detail		 Chr5:123129040 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 404 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235627989
MGI SNP Detail		 Chr5:123129091 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 455 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs33703256
MGI SNP Detail		 Chr5:123129121 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 485 bp upstream
 SNP C/T C C T T T T C T T T C C T C T C
rs221736498
MGI SNP Detail		 Chr5:123129122 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 486 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29732892
MGI SNP Detail		 Chr5:123129129 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 493 bp upstream
 SNP A/G G G G A G A A A A A A G A A G A G
rs265433864
MGI SNP Detail		 Chr5:123129130 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 494 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231944315
MGI SNP Detail		 Chr5:123129148 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 512 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33669204
MGI SNP Detail		 Chr5:123129165 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 529 bp upstream
 SNP A/G G G G A G A A A G A A A G G A G G A G
rs262580845
MGI SNP Detail		 Chr5:123129191 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 555 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226935101
MGI SNP Detail		 Chr5:123129207 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 571 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37752521
MGI SNP Detail		 Chr5:123129210 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 574 bp upstream
 SNP A/C A A A C A C C C C C C A C C C C A
rs36776200
MGI SNP Detail		 Chr5:123129253 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 617 bp upstream
 SNP A/G A A G A G G G G G G A G G G G A
rs51689486
MGI SNP Detail		 Chr5:123129302 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 666 bp upstream
 SNP A/G G G A
rs52348261
MGI SNP Detail		 Chr5:123129308 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 672 bp upstream
 SNP C/T C C T
rs216369306
MGI SNP Detail		 Chr5:123129324 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Gm73435 within coordinates of
Rr124330 within coordinates of
Tssr53180 688 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29728321
MGI SNP Detail		 Chr5:123129539 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 903 bp upstream
 SNP C/T T T T C T C C C T C C C T C C T C C T
rs261932203
MGI SNP Detail		 Chr5:123129681 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1045 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33179909
MGI SNP Detail		 Chr5:123129707 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1071 bp upstream
 SNP C/T C C T C T T T T T T T C T T C T C
rs229983906
MGI SNP Detail		 Chr5:123129726 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1090 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37110666
MGI SNP Detail		 Chr5:123129835 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1199 bp upstream
 SNP C/T C C C C C C C C C C T C C T C
rs221751645
MGI SNP Detail		 Chr5:123129885 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1249 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs37008158
MGI SNP Detail		 Chr5:123129889 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1253 bp upstream
 SNP C/T T T T T T T T T C C T T C T
rs258474843
MGI SNP Detail		 Chr5:123129890 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1254 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224882781
MGI SNP Detail		 Chr5:123129915 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1279 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246779056
MGI SNP Detail		 Chr5:123129934 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1298 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583650398
MGI SNP Detail		 Chr5:123129951 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1315 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265149149
MGI SNP Detail		 Chr5:123129980 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1344 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs226797232
MGI SNP Detail		 Chr5:123130011 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1375 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29505534
MGI SNP Detail		 Chr5:123130047 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1411 bp upstream
 SNP C/T C C C T C T T T T T T C C C T C T
rs3710453
MGI SNP Detail		 Chr5:123130133 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Rr124330 within coordinates of
Tssr53180 1497 bp upstream
 SNP C/T T T T C T C
rs3711142
MGI SNP Detail		 Chr5:123130266 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1630 bp upstream
 SNP C/T T T T C T C
rs260287703
MGI SNP Detail		 Chr5:123130296 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1660 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3711744
MGI SNP Detail		 Chr5:123130375 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1739 bp upstream
 SNP G/T T T G T G G G T G G G T G G T G G T
rs36383903
MGI SNP Detail		 Chr5:123130384 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1748 bp upstream
 SNP C/G G G G G G G G G G G C G G C G
rs250844925
MGI SNP Detail		 Chr5:123130387 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1751 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214297747
MGI SNP Detail		 Chr5:123130538 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1902 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229806428
MGI SNP Detail		 Chr5:123130569 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1933 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs248902809
MGI SNP Detail		 Chr5:123130576 A930024E05Rik within coordinates of
Gm44574 within coordinates of
Tssr53180 1940 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 62 of 62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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