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Mouse SNP Summary
Symbol
Name
ID 		Tssr53210
transcription start site region 53210
MGI:5980977

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Showing SNP(s) 1 - 30 of 30

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254129361
MGI SNP Detail		 Chr5:123276094 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1938 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs261401508
MGI SNP Detail		 Chr5:123276115 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1917 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227475176
MGI SNP Detail		 Chr5:123276250 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1782 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs247146031
MGI SNP Detail		 Chr5:123276287 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1745 bp downstream
 SNP G/T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs213500335
MGI SNP Detail		 Chr5:123276477 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1555 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs236990938
MGI SNP Detail		 Chr5:123276510 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1522 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs252510359
MGI SNP Detail		 Chr5:123276794 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1238 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs212540517
MGI SNP Detail		 Chr5:123276801 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1231 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C
rs241697213
MGI SNP Detail		 Chr5:123276913 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1119 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C G C C C C C C C C C C C
rs252919840
MGI SNP Detail		 Chr5:123276936 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 1096 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C T C C C C
rs214985891
MGI SNP Detail		 Chr5:123277035 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 997 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs233344663
MGI SNP Detail		 Chr5:123277116 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 916 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C G C C C C C C C C C C C
rs252216548
MGI SNP Detail		 Chr5:123277147 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53209 within coordinates of
Tssr53210 885 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222444072
MGI SNP Detail		 Chr5:123277270 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 762 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs244669124
MGI SNP Detail		 Chr5:123277368 AI480526 within coordinates of
Cpgi16576 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 664 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs261186344
MGI SNP Detail		 Chr5:123277426 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 606 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221731197
MGI SNP Detail		 Chr5:123277553 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 479 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G
rs582847904
MGI SNP Detail		 Chr5:123277675 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 357 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250265593
MGI SNP Detail		 Chr5:123277695 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 337 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261295040
MGI SNP Detail		 Chr5:123277720 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 312 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227544249
MGI SNP Detail		 Chr5:123277756 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 276 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs241396712
MGI SNP Detail		 Chr5:123277869 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 163 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A G G A A A A A A A A A G A
rs257456708
MGI SNP Detail		 Chr5:123277876 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 156 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231016829
MGI SNP Detail		 Chr5:123277878 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 154 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249152059
MGI SNP Detail		 Chr5:123277905 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 127 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213242685
MGI SNP Detail		 Chr5:123278286 AI480526 within coordinates of
Gm38102 within coordinates of
Rr378574 within coordinates of
Tssr53210 243 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233057444
MGI SNP Detail		 Chr5:123279615 AI480526 within coordinates of
Cpgi16577 within coordinates of
Gm38102 within coordinates of
Tssr53210 1572 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
rs247143947
MGI SNP Detail		 Chr5:123279838 AI480526 within coordinates of
Cpgi16577 within coordinates of
Gm38102 within coordinates of
Tssr53210 1795 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs214852377
MGI SNP Detail		 Chr5:123279844 AI480526 within coordinates of
Cpgi16577 within coordinates of
Gm38102 within coordinates of
Tssr53210 1801 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233402854
MGI SNP Detail		 Chr5:123279995 AI480526 within coordinates of
Cpgi16577 within coordinates of
Gm38102 within coordinates of
Tssr53210 1952 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
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Showing SNP(s) 1 - 30 of 30
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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