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Mouse SNP Summary
Symbol
Name
ID
Tssr53396
transcription start site region 53396
MGI:5981163

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Showing SNP(s) 1 - 51 of 51

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226029801
MGI SNP Detail
Chr5:125118208 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1897 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C C C C C G C C C G C C C C C C C C
rs261754532
MGI SNP Detail
Chr5:125118281 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1824 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37124468
MGI SNP Detail
Chr5:125118336 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1769 bp downstream
SNP G/T T T T T T T T T T G T T G T
rs238095989
MGI SNP Detail
Chr5:125118474 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1631 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs255036573
MGI SNP Detail
Chr5:125118499 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1606 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs36721523
MGI SNP Detail
Chr5:125118528 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1577 bp downstream
SNP A/G A A A A A A A A A G A A G A
rs252015627
MGI SNP Detail
Chr5:125118533 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1572 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs266074790
MGI SNP Detail
Chr5:125118590 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1515 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233042432
MGI SNP Detail
Chr5:125118814 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1291 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253963593
MGI SNP Detail
Chr5:125119040 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1065 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212077630
MGI SNP Detail
Chr5:125119197 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 908 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232740055
MGI SNP Detail
Chr5:125119278 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 827 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs245085002
MGI SNP Detail
Chr5:125119323 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 782 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C C C C C G C C C G C C C C C C C C
rs215937375
MGI SNP Detail
Chr5:125119663 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 442 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs240199566
MGI SNP Detail
Chr5:125119726 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 379 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261054675
MGI SNP Detail
Chr5:125120230 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 116 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A A A A A G A A A G A A A A
rs33302047
MGI SNP Detail
Chr5:125120256 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 142 bp upstream
SNP A/G G G A G G G
rs37196174
MGI SNP Detail
Chr5:125120367 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 253 bp upstream
SNP A/G G A A A A A A A G A
rs235700788
MGI SNP Detail
Chr5:125120370 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 256 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C G C C C G C C C C
rs248412985
MGI SNP Detail
Chr5:125120373 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 259 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T C T T T C T T T T
rs220383209
MGI SNP Detail
Chr5:125120553 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 439 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237931912
MGI SNP Detail
Chr5:125120555 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 441 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255076846
MGI SNP Detail
Chr5:125120588 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 474 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221212498
MGI SNP Detail
Chr5:125120643 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 529 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs247407209
MGI SNP Detail
Chr5:125120644 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 530 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264326663
MGI SNP Detail
Chr5:125120700 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 586 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233779417
MGI SNP Detail
Chr5:125120737 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 623 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249779880
MGI SNP Detail
Chr5:125120774 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 660 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A
rs255885274
MGI SNP Detail
Chr5:125120779 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 665 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215876022
MGI SNP Detail
Chr5:125120872 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 758 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238004111
MGI SNP Detail
Chr5:125120888 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 774 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs260263703
MGI SNP Detail
Chr5:125120982 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 868 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218326047
MGI SNP Detail
Chr5:125121035 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 921 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237386148
MGI SNP Detail
Chr5:125121038 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 924 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248450048
MGI SNP Detail
Chr5:125121107 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 993 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T T C T T T T T T T T T T C T T T C T T T T
rs33507764
MGI SNP Detail
Chr5:125121322 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1208 bp upstream
SNP A/T T A T T T
rs231653090
MGI SNP Detail
Chr5:125121482 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1368 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs252324460
MGI SNP Detail
Chr5:125121546 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1432 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs224638683
MGI SNP Detail
Chr5:125121553 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1439 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244828184
MGI SNP Detail
Chr5:125121661 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1547 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264014734
MGI SNP Detail
Chr5:125121677 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1563 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225556343
MGI SNP Detail
Chr5:125121690 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1576 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244702521
MGI SNP Detail
Chr5:125121817 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1703 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255923049
MGI SNP Detail
Chr5:125121834 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1720 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226479741
MGI SNP Detail
Chr5:125121961 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1847 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs238727655
MGI SNP Detail
Chr5:125121984 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1870 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259926785
MGI SNP Detail
Chr5:125122018 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1904 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C T C C C T C C C C
rs29633805
MGI SNP Detail
Chr5:125122043 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1929 bp upstream
SNP C/T T T C T C
rs254794124
MGI SNP Detail
Chr5:125122055 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1941 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G T G G G T G G G G
rs218166240
MGI SNP Detail
Chr5:125122079 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1965 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229018760
MGI SNP Detail
Chr5:125122097 Ncor2 within coordinates of
Rr126915 within coordinates of
Tssr53396 1983 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 51 of 51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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