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Mouse SNP Summary
Symbol
Name
ID 		Tssr53607
transcription start site region 53607
MGI:5981374

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265123068
MGI SNP Detail		 Chr5:134211294 Tssr53607 1943 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G A G G G G G G T G G G G G G G A G G G G
rs222418806
MGI SNP Detail		 Chr5:134211335 Tssr53607 1902 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs238290298
MGI SNP Detail		 Chr5:134211456 Tssr53607 1781 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A A A A A A G G A A A
rs257180912
MGI SNP Detail		 Chr5:134211458 Tssr53607 1779 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227588190
MGI SNP Detail		 Chr5:134211539 Tssr53607 1698 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581273030
MGI SNP Detail		 Chr5:134211582 Tssr53607 1655 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs246680285
MGI SNP Detail		 Chr5:134211727 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1510 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264240412
MGI SNP Detail		 Chr5:134211771 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1466 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs227752202
MGI SNP Detail		 Chr5:134211781 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1456 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249640141
MGI SNP Detail		 Chr5:134211796 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1441 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C C T T T
rs213967854
MGI SNP Detail		 Chr5:134211878 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1359 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs237261856
MGI SNP Detail		 Chr5:134211887 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1350 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246809473
MGI SNP Detail		 Chr5:134211980 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1257 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216285717
MGI SNP Detail		 Chr5:134211982 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1255 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235892157
MGI SNP Detail		 Chr5:134212000 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1237 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C A C C C C
rs255633201
MGI SNP Detail		 Chr5:134212015 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1222 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs212082384
MGI SNP Detail		 Chr5:134212103 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1134 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237355993
MGI SNP Detail		 Chr5:134212132 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1105 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs257233653
MGI SNP Detail		 Chr5:134212152 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1085 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C C T T T
rs223381994
MGI SNP Detail		 Chr5:134212154 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1083 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs238253773
MGI SNP Detail		 Chr5:134212175 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1062 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs251072099
MGI SNP Detail		 Chr5:134212201 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1036 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs221359145
MGI SNP Detail		 Chr5:134212237 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 1000 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs240778108
MGI SNP Detail		 Chr5:134212259 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 978 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs266137908
MGI SNP Detail		 Chr5:134212329 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 908 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227244347
MGI SNP Detail		 Chr5:134212356 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 881 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244679806
MGI SNP Detail		 Chr5:134212362 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 875 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262250636
MGI SNP Detail		 Chr5:134212369 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 868 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs226393969
MGI SNP Detail		 Chr5:134212386 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 851 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C
rs246250210
MGI SNP Detail		 Chr5:134212400 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 837 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216138794
MGI SNP Detail		 Chr5:134212417 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 820 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A A A A A G G A A A
rs228779794
MGI SNP Detail		 Chr5:134212451 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 786 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs255047496
MGI SNP Detail		 Chr5:134212504 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 733 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs212768537
MGI SNP Detail		 Chr5:134212505 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 732 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs235500118
MGI SNP Detail		 Chr5:134212526 Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 711 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs262083996
MGI SNP Detail		 Chr5:134212576 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 661 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584957632
MGI SNP Detail		 Chr5:134212580 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 657 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs579267345
MGI SNP Detail		 Chr5:134212583 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 654 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs214847163
MGI SNP Detail		 Chr5:134212614 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 623 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs232974178
MGI SNP Detail		 Chr5:134212625 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 612 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C T C C C C
rs252113244
MGI SNP Detail		 Chr5:134212634 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 603 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs221337056
MGI SNP Detail		 Chr5:134212660 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 577 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240740127
MGI SNP Detail		 Chr5:134212668 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 569 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T
rs260854454
MGI SNP Detail		 Chr5:134212749 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 488 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220130718
MGI SNP Detail		 Chr5:134212779 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 458 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241776013
MGI SNP Detail		 Chr5:134212846 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr49084 within coordinates of
Tssr53607 391 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs581838254
MGI SNP Detail		 Chr5:134212938 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 299 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264973035
MGI SNP Detail		 Chr5:134212981 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 256 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A A A A A G G A A A
rs226260837
MGI SNP Detail		 Chr5:134213007 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 230 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240265615
MGI SNP Detail		 Chr5:134213011 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 226 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259709305
MGI SNP Detail		 Chr5:134213015 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 222 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228741093
MGI SNP Detail		 Chr5:134213025 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 212 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260498928
MGI SNP Detail		 Chr5:134213033 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 204 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A G A A A A
rs212389737
MGI SNP Detail		 Chr5:134213163 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 74 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A C C A A A A A A C A A A A A A C C A A A
rs229627840
MGI SNP Detail		 Chr5:134213184 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 53 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G A G G G G G G G G G G G
rs251081371
MGI SNP Detail		 Chr5:134213214 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 23 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs214441178
MGI SNP Detail		 Chr5:134213242 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs235513493
MGI SNP Detail		 Chr5:134213353 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 90 bp upstream
 SNP A/G G A
rs263978281
MGI SNP Detail		 Chr5:134213357 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 94 bp upstream
 SNP A/C A C
rs232939762
MGI SNP Detail		 Chr5:134213360 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 97 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246121128
MGI SNP Detail		 Chr5:134213408 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 145 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G T G G G G G G G G G G G
rs216799717
MGI SNP Detail		 Chr5:134213418 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 155 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs234186797
MGI SNP Detail		 Chr5:134213446 Cpgi16715 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Rr399398 within coordinates of
Tssr53607 183 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264121260
MGI SNP Detail		 Chr5:134213522 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 259 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220219559
MGI SNP Detail		 Chr5:134213527 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 264 bp upstream
 SNP A/C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237297956
MGI SNP Detail		 Chr5:134213530 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 267 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257041586
MGI SNP Detail		 Chr5:134213531 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 268 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs578492090
MGI SNP Detail		 Chr5:134213537 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 274 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581934400
MGI SNP Detail		 Chr5:134213542 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 279 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs585343884
MGI SNP Detail		 Chr5:134213543 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 280 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219997033
MGI SNP Detail		 Chr5:134213552 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 289 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C C T T T
rs240167743
MGI SNP Detail		 Chr5:134213561 Cpgi16715 within coordinates of
Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 298 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259699388
MGI SNP Detail		 Chr5:134213664 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 401 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222402770
MGI SNP Detail		 Chr5:134213674 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 411 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs248130257
MGI SNP Detail		 Chr5:134213750 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 487 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264735776
MGI SNP Detail		 Chr5:134213763 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 500 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs229135562
MGI SNP Detail		 Chr5:134213786 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 523 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs255772544
MGI SNP Detail		 Chr5:134213794 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 531 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A A G G G G G G A G G G G G G G A A G G G
rs256713379
MGI SNP Detail		 Chr5:134213799 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Rr124476 within coordinates of
Tssr53607 536 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C C T T T T T T C T T T T T T T C C T T T
rs226911269
MGI SNP Detail		 Chr5:134213811 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 548 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246016773
MGI SNP Detail		 Chr5:134213828 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 565 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A T A A A A
rs216833410
MGI SNP Detail		 Chr5:134213839 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 576 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs243320591
MGI SNP Detail		 Chr5:134213847 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 584 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs249254702
MGI SNP Detail		 Chr5:134213855 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 592 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A A A A A A
rs212117060
MGI SNP Detail		 Chr5:134213867 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 604 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T T A T T T T T T T T T T T T
rs235333560
MGI SNP Detail		 Chr5:134213873 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 610 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A T A A A A
rs578701240
MGI SNP Detail		 Chr5:134213910 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 647 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251213957
MGI SNP Detail		 Chr5:134213972 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 709 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48482262
MGI SNP Detail		 Chr5:134213991 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 728 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs233472248
MGI SNP Detail		 Chr5:134213993 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 730 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G
rs46560697
MGI SNP Detail		 Chr5:134214017 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 754 bp upstream
 SNP C/G G G G G G G G G G G G G G C G
rs222333254
MGI SNP Detail		 Chr5:134214029 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 766 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C A C C C C C C C A C C C C
rs582439616
MGI SNP Detail		 Chr5:134214146 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 883 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250993507
MGI SNP Detail		 Chr5:134214301 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 1038 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs261312108
MGI SNP Detail		 Chr5:134214352 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 1089 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221450579
MGI SNP Detail		 Chr5:134214365 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 1102 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs243422091
MGI SNP Detail		 Chr5:134214390 Gm73509 within coordinates of
Gtf2ird2 within coordinates of
Tssr53607 1127 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs256761961
MGI SNP Detail		 Chr5:134214485 Gtf2ird2 within coordinates of
Tssr53607 1222 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T T G G G G G G T G G G G G G G T T G G G
rs227135127
MGI SNP Detail		 Chr5:134214584 Gtf2ird2 within coordinates of
Tssr53607 1321 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs50516300
MGI SNP Detail		 Chr5:134214622 Gtf2ird2 within coordinates of
Rr110116 within coordinates of
Tssr53607 1359 bp upstream
 SNP C/T T T T T T T C T T T C T T C T
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Showing SNP(s) 1 - 100 of 117
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory