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Mouse SNP Summary
Symbol
Name
ID
Tssr53699
transcription start site region 53699
MGI:5981466

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Showing SNP(s) 1 - 61 of 61

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239352728
MGI SNP Detail
Chr5:134972167 Tssr53699 1938 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C T T T T T C T T T T T T C T T T T T C T C T T T C
rs264164126
MGI SNP Detail
Chr5:134972179 Tssr53699 1926 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A G G A A A A A G A A A A A A G A A A A A G A G A A A G
rs217931321
MGI SNP Detail
Chr5:134972227 Tssr53699 1878 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T G G T T T T T G T T T T T T G T T T T T G T G T T T G
rs13487255
MGI SNP Detail
Chr5:134972247 Tssr53699 1858 bp downstream
SNP A/G G G G G G G G G G G G G G G A
rs13497264
MGI SNP Detail
Chr5:134972314 Tssr53699 1791 bp downstream
SNP A/G A A A A A A A A A G A A A A G
rs219937451
MGI SNP Detail
Chr5:134972327 Tssr53699 1778 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13487256
MGI SNP Detail
Chr5:134972329 Tssr53699 1776 bp downstream
SNP C/T C C C C C C C C T C C C C
rs263817946
MGI SNP Detail
Chr5:134972459 Tssr53699 1646 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226696971
MGI SNP Detail
Chr5:134972498 Tssr53699 1607 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs13497265
MGI SNP Detail
Chr5:134972517 Tssr53699 1588 bp downstream
SNP A/G G G G G G G G G G G G G G A
rs13487257
MGI SNP Detail
Chr5:134972593 Tssr53699 1512 bp downstream
SNP A/G G G G G G G G G G G G G A
rs585103412
MGI SNP Detail
Chr5:134972631 Tssr53699 1474 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs579026766
MGI SNP Detail
Chr5:134972635 Tssr53699 1470 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581539492
MGI SNP Detail
Chr5:134972651 Tssr53699 1454 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585303122
MGI SNP Detail
Chr5:134972656 Tssr53699 1449 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A A A A A A A A A A A A A A
rs578323654
MGI SNP Detail
Chr5:134972658 Tssr53699 1447 bp downstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs13487258
MGI SNP Detail
Chr5:134972728 Tssr53699 1377 bp downstream
SNP C/T C C C C C C C C C C C C C T
rs243965916
MGI SNP Detail
Chr5:134972759 Tssr53699 1346 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256531379
MGI SNP Detail
Chr5:134972769 Tssr53699 1336 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A G G A A A A A G A A A A A A A A A A A A G A G A A A G
rs13497266
MGI SNP Detail
Chr5:134972806 Tssr53699 1299 bp downstream
SNP C/T C C C C C C C C C T C C C C C
rs13487259
MGI SNP Detail
Chr5:134972827 Tssr53699 1278 bp downstream
SNP A/G G G G G G G G G G G G G G A
rs581980576
MGI SNP Detail
Chr5:134972875 Tssr53699 1230 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G T G G G G G G G G G G G G G T G G G G G T G T G G G T
rs13497267
MGI SNP Detail
Chr5:134972963 Tssr53699 1142 bp downstream
SNP C/T T T T T T T T T T T T T T T C
rs211903743
MGI SNP Detail
Chr5:134973076 Tssr53699 1029 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs585381094
MGI SNP Detail
Chr5:134973121 Tssr53699 984 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230489420
MGI SNP Detail
Chr5:134973211 Rr124500 within coordinates of
Tssr53699 894 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs250969608
MGI SNP Detail
Chr5:134973222 Rr124500 within coordinates of
Tssr53699 883 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs220112308
MGI SNP Detail
Chr5:134973227 Rr124500 within coordinates of
Tssr53699 878 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs237538839
MGI SNP Detail
Chr5:134973352 Rr124500 within coordinates of
Tssr53699 753 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263185031
MGI SNP Detail
Chr5:134973358 Rr124500 within coordinates of
Tssr53699 747 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs13487260
MGI SNP Detail
Chr5:134973399 Rr124500 within coordinates of
Tssr53699 706 bp downstream
SNP A/G A A A A A G A A G
rs13497268
MGI SNP Detail
Chr5:134973434 Rr124500 within coordinates of
Tssr53699 671 bp downstream
SNP G/T T T T T T T G T T
rs254258181
MGI SNP Detail
Chr5:134973458 Rr124500 within coordinates of
Tssr53699 647 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218874456
MGI SNP Detail
Chr5:134973777 Rr124500 within coordinates of
Tssr53699 328 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A T A A T A A A T T A A A A A T A A A A A A T A A A A A T A T A A A
rs578841904
MGI SNP Detail
Chr5:134973792 Rr124500 within coordinates of
Tssr53699 313 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs585968172
MGI SNP Detail
Chr5:134973794 Rr124500 within coordinates of
Tssr53699 311 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs237863740
MGI SNP Detail
Chr5:134973852 Rr124500 within coordinates of
Tssr53699 253 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256513303
MGI SNP Detail
Chr5:134973869 Rr124500 within coordinates of
Tssr53699 236 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13487261
MGI SNP Detail
Chr5:134973887 Rr124500 within coordinates of
Tssr53699 218 bp downstream
SNP A/C C C C C C C C C C C C C C C A
rs253215283
MGI SNP Detail
Chr5:134973931 Rr124500 within coordinates of
Tssr53699 174 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs265936481
MGI SNP Detail
Chr5:134973944 Rr124500 within coordinates of
Tssr53699 161 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs32229239
MGI SNP Detail
Chr5:134973968 Rr124500 within coordinates of
Tssr53699 137 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs13487262
MGI SNP Detail
Chr5:134974150 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr49108 within coordinates of
Tssr53699 38 bp upstream
SNP C/T C C C C C C C C T C C C C C
rs212044741
MGI SNP Detail
Chr5:134974519 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 407 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs230479139
MGI SNP Detail
Chr5:134974526 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 414 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs13497269
MGI SNP Detail
Chr5:134974589 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 477 bp upstream
SNP A/G G G G G G G G A G G G
rs13487263
MGI SNP Detail
Chr5:134974631 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 519 bp upstream
SNP C/T T T T T T T T T T T T T T T C
rs13497270
MGI SNP Detail
Chr5:134974766 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 654 bp upstream
SNP C/T T T T T T T T T T C T T T T C
rs32229240
MGI SNP Detail
Chr5:134974916 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 804 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs13487264
MGI SNP Detail
Chr5:134975003 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr49109 within coordinates of
Tssr53699 891 bp upstream
SNP A/G G G G G G G G G G G G G G G A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239994190
MGI SNP Detail
Chr5:134975123 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1011 bp upstream
Tssr53702 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T C T C T T T C
rs32229241
MGI SNP Detail
Chr5:134975318 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1206 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs219051708
MGI SNP Detail
Chr5:134975539 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1427 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237839023
MGI SNP Detail
Chr5:134975540 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1428 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32229242
MGI SNP Detail
Chr5:134975618 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1506 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs13487265
MGI SNP Detail
Chr5:134975685 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 1573 bp upstream
SNP C/T T T T T C T T T C
rs249287938
MGI SNP Detail
Chr5:134975727 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 1615 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264113447
MGI SNP Detail
Chr5:134975820 Rr124500 within coordinates of
Tssr53699 1708 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235019472
MGI SNP Detail
Chr5:134975858 Rr124500 within coordinates of
Tssr53699 1746 bp upstream
SNP A/G/T G G G G G G G G G G G G G G G G G G G T G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237313803
MGI SNP Detail
Chr5:134975941 Rr124500 within coordinates of
Tssr53699 1829 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255994019
MGI SNP Detail
Chr5:134975991 Rr124500 within coordinates of
Tssr53699 1879 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 61 of 61

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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory