About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr53699
transcription start site region 53699
MGI:5981466

<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239352728
MGI SNP Detail		 Chr5:134972167 Tssr53699 1938 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C T T T T T C T T T T T T C T T T T T C T C T T T C
rs264164126
MGI SNP Detail		 Chr5:134972179 Tssr53699 1926 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A G G A A A A A G A A A A A A G A A A A A G A G A A A G
rs217931321
MGI SNP Detail		 Chr5:134972227 Tssr53699 1878 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T G G T T T T T G T T T T T T G T T T T T G T G T T T G
rs13487255
MGI SNP Detail		 Chr5:134972247 Tssr53699 1858 bp downstream
 SNP A/G G G G G G G G G G G G G G G A
rs13497264
MGI SNP Detail		 Chr5:134972314 Tssr53699 1791 bp downstream
 SNP A/G A A A A A A A A A G A A A A G
rs219937451
MGI SNP Detail		 Chr5:134972327 Tssr53699 1778 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13487256
MGI SNP Detail		 Chr5:134972329 Tssr53699 1776 bp downstream
 SNP C/T C C C C C C C C T C C C C
rs263817946
MGI SNP Detail		 Chr5:134972459 Tssr53699 1646 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226696971
MGI SNP Detail		 Chr5:134972498 Tssr53699 1607 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs13497265
MGI SNP Detail		 Chr5:134972517 Tssr53699 1588 bp downstream
 SNP A/G G G G G G G G G G G G G G A
rs13487257
MGI SNP Detail		 Chr5:134972593 Tssr53699 1512 bp downstream
 SNP A/G G G G G G G G G G G G G A
rs585103412
MGI SNP Detail		 Chr5:134972631 Tssr53699 1474 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs579026766
MGI SNP Detail		 Chr5:134972635 Tssr53699 1470 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581539492
MGI SNP Detail		 Chr5:134972651 Tssr53699 1454 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585303122
MGI SNP Detail		 Chr5:134972656 Tssr53699 1449 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A A A A A A A A A A A A A A
rs578323654
MGI SNP Detail		 Chr5:134972658 Tssr53699 1447 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs13487258
MGI SNP Detail		 Chr5:134972728 Tssr53699 1377 bp downstream
 SNP C/T C C C C C C C C C C C C C T
rs243965916
MGI SNP Detail		 Chr5:134972759 Tssr53699 1346 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256531379
MGI SNP Detail		 Chr5:134972769 Tssr53699 1336 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A G G A A A A A G A A A A A A A A A A A A G A G A A A G
rs13497266
MGI SNP Detail		 Chr5:134972806 Tssr53699 1299 bp downstream
 SNP C/T C C C C C C C C C T C C C C C
rs13487259
MGI SNP Detail		 Chr5:134972827 Tssr53699 1278 bp downstream
 SNP A/G G G G G G G G G G G G G G A
rs581980576
MGI SNP Detail		 Chr5:134972875 Tssr53699 1230 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G T G G G G G G G G G G G G G T G G G G G T G T G G G T
rs13497267
MGI SNP Detail		 Chr5:134972963 Tssr53699 1142 bp downstream
 SNP C/T T T T T T T T T T T T T T T C
rs211903743
MGI SNP Detail		 Chr5:134973076 Tssr53699 1029 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs585381094
MGI SNP Detail		 Chr5:134973121 Tssr53699 984 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230489420
MGI SNP Detail		 Chr5:134973211 Rr124500 within coordinates of
Tssr53699 894 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs250969608
MGI SNP Detail		 Chr5:134973222 Rr124500 within coordinates of
Tssr53699 883 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs220112308
MGI SNP Detail		 Chr5:134973227 Rr124500 within coordinates of
Tssr53699 878 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs237538839
MGI SNP Detail		 Chr5:134973352 Rr124500 within coordinates of
Tssr53699 753 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263185031
MGI SNP Detail		 Chr5:134973358 Rr124500 within coordinates of
Tssr53699 747 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs13487260
MGI SNP Detail		 Chr5:134973399 Rr124500 within coordinates of
Tssr53699 706 bp downstream
 SNP A/G A A A A A G A A G
rs13497268
MGI SNP Detail		 Chr5:134973434 Rr124500 within coordinates of
Tssr53699 671 bp downstream
 SNP G/T T T T T T T G T T
rs254258181
MGI SNP Detail		 Chr5:134973458 Rr124500 within coordinates of
Tssr53699 647 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218874456
MGI SNP Detail		 Chr5:134973777 Rr124500 within coordinates of
Tssr53699 328 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A T A A T A A A T T A A A A A T A A A A A A T A A A A A T A T A A A
rs578841904
MGI SNP Detail		 Chr5:134973792 Rr124500 within coordinates of
Tssr53699 313 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs585968172
MGI SNP Detail		 Chr5:134973794 Rr124500 within coordinates of
Tssr53699 311 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs237863740
MGI SNP Detail		 Chr5:134973852 Rr124500 within coordinates of
Tssr53699 253 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256513303
MGI SNP Detail		 Chr5:134973869 Rr124500 within coordinates of
Tssr53699 236 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13487261
MGI SNP Detail		 Chr5:134973887 Rr124500 within coordinates of
Tssr53699 218 bp downstream
 SNP A/C C C C C C C C C C C C C C C A
rs253215283
MGI SNP Detail		 Chr5:134973931 Rr124500 within coordinates of
Tssr53699 174 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs265936481
MGI SNP Detail		 Chr5:134973944 Rr124500 within coordinates of
Tssr53699 161 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs32229239
MGI SNP Detail		 Chr5:134973968 Rr124500 within coordinates of
Tssr53699 137 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs13487262
MGI SNP Detail		 Chr5:134974150 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr49108 within coordinates of
Tssr53699 38 bp upstream
 SNP C/T C C C C C C C C T C C C C C
rs212044741
MGI SNP Detail		 Chr5:134974519 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 407 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs230479139
MGI SNP Detail		 Chr5:134974526 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 414 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs13497269
MGI SNP Detail		 Chr5:134974589 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 477 bp upstream
 SNP A/G G G G G G G G A G G G
rs13487263
MGI SNP Detail		 Chr5:134974631 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 519 bp upstream
 SNP C/T T T T T T T T T T T T T T T C
rs13497270
MGI SNP Detail		 Chr5:134974766 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 654 bp upstream
 SNP C/T T T T T T T T T T C T T T T C
rs32229240
MGI SNP Detail		 Chr5:134974916 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 804 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs13487264
MGI SNP Detail		 Chr5:134975003 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr49109 within coordinates of
Tssr53699 891 bp upstream
 SNP A/G G G G G G G G G G G G G G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239994190
MGI SNP Detail		 Chr5:134975123 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1011 bp upstream
Tssr53702 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T C T C T T T C
rs32229241
MGI SNP Detail		 Chr5:134975318 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1206 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs219051708
MGI SNP Detail		 Chr5:134975539 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1427 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237839023
MGI SNP Detail		 Chr5:134975540 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1428 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32229242
MGI SNP Detail		 Chr5:134975618 Cldn4 within coordinates of
Cpgi16731 within coordinates of
Rr124500 within coordinates of
Tssr53699 1506 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs13487265
MGI SNP Detail		 Chr5:134975685 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 1573 bp upstream
 SNP C/T T T T T C T T T C
rs249287938
MGI SNP Detail		 Chr5:134975727 Cldn4 within coordinates of
Rr124500 within coordinates of
Tssr53699 1615 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264113447
MGI SNP Detail		 Chr5:134975820 Rr124500 within coordinates of
Tssr53699 1708 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235019472
MGI SNP Detail		 Chr5:134975858 Rr124500 within coordinates of
Tssr53699 1746 bp upstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G T G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237313803
MGI SNP Detail		 Chr5:134975941 Rr124500 within coordinates of
Tssr53699 1829 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255994019
MGI SNP Detail		 Chr5:134975991 Rr124500 within coordinates of
Tssr53699 1879 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 61 of 61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory