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Mouse SNP Summary
Symbol
Name
ID
Tssr55278
transcription start site region 55278
MGI:5983045

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Showing SNP(s) 1 - 59 of 59

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251503846
MGI SNP Detail
Chr6:29533399 Irf5 within coordinates of
Tssr55278 1972 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214216082
MGI SNP Detail
Chr6:29533408 Irf5 within coordinates of
Tssr55278 1963 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A G A A A A A A A A A A A A
rs224933347
MGI SNP Detail
Chr6:29533417 Irf5 within coordinates of
Tssr55278 1954 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586600872
MGI SNP Detail
Chr6:29533478 Irf5 within coordinates of
Tssr55278 1893 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580866654
MGI SNP Detail
Chr6:29533479 Irf5 within coordinates of
Tssr55278 1892 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243452909
MGI SNP Detail
Chr6:29533518 Irf5 within coordinates of
Tssr55278 1853 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217258044
MGI SNP Detail
Chr6:29533531 Irf5 within coordinates of
Tssr55278 1840 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236570987
MGI SNP Detail
Chr6:29533542 Irf5 within coordinates of
Tssr55278 1829 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs263835736
MGI SNP Detail
Chr6:29533546 Irf5 within coordinates of
Tssr55278 1825 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216804213
MGI SNP Detail
Chr6:29533643 Irf5 within coordinates of
Tssr55278 1728 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240104790
MGI SNP Detail
Chr6:29533707 Irf5 within coordinates of
Tssr55278 1664 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C T C C C C C C C T C C C
rs29611760
MGI SNP Detail
Chr6:29533937 Irf5 within coordinates of
Tssr55278 1434 bp upstream
SNP A/T T T T T T T A T T T A T T A T
rs219735268
MGI SNP Detail
Chr6:29533980 Irf5 within coordinates of
Tssr55278 1391 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237068920
MGI SNP Detail
Chr6:29533983 Irf5 within coordinates of
Tssr55278 1388 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29611762
MGI SNP Detail
Chr6:29534058 Irf5 within coordinates of
Tssr55278 1313 bp upstream
SNP A/G G G G G G G A G G G G G G G G
rs222927344
MGI SNP Detail
Chr6:29534079 Irf5 within coordinates of
Tssr55277 within coordinates of
Tssr55278 1292 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247165588
MGI SNP Detail
Chr6:29534097 Irf5 within coordinates of
Tssr55278 1274 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265645919
MGI SNP Detail
Chr6:29534124 Irf5 within coordinates of
Tssr55278 1247 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585125464
MGI SNP Detail
Chr6:29534132 Irf5 within coordinates of
Tssr55278 1239 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs587436185
MGI SNP Detail
Chr6:29534152 Irf5 within coordinates of
Tssr55278 1219 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29612674
MGI SNP Detail
Chr6:29534172 Irf5 within coordinates of
Tssr55278 1199 bp upstream
SNP G/T G G G G G G G G G G T G G G G
rs231435162
MGI SNP Detail
Chr6:29534279 Irf5 within coordinates of
Tssr55278 1092 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246524249
MGI SNP Detail
Chr6:29534291 Irf5 within coordinates of
Tssr55278 1080 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257225702
MGI SNP Detail
Chr6:29534303 Irf5 within coordinates of
Tssr55278 1068 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224961855
MGI SNP Detail
Chr6:29534374 Irf5 within coordinates of
Tssr55278 997 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243459914
MGI SNP Detail
Chr6:29534394 Irf5 within coordinates of
Tssr55278 977 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217313163
MGI SNP Detail
Chr6:29534580 Irf5 within coordinates of
Tssr55278 791 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233874884
MGI SNP Detail
Chr6:29534608 Irf5 within coordinates of
Tssr55278 763 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253025419
MGI SNP Detail
Chr6:29534609 Irf5 within coordinates of
Tssr55278 762 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581116837
MGI SNP Detail
Chr6:29534652 Irf5 within coordinates of
Tssr55278 719 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217408528
MGI SNP Detail
Chr6:29534891 Irf5 within coordinates of
Tssr55278 480 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238054740
MGI SNP Detail
Chr6:29534903 Irf5 within coordinates of
Tssr55278 468 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs262514704
MGI SNP Detail
Chr6:29535009 Irf5 within coordinates of
Tssr55278 362 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs213675985
MGI SNP Detail
Chr6:29535020 Irf5 within coordinates of
Tssr55278 351 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231046648
MGI SNP Detail
Chr6:29535084 Irf5 within coordinates of
Tssr55278 287 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248497166
MGI SNP Detail
Chr6:29535391 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 9 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs222993950
MGI SNP Detail
Chr6:29535536 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 154 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250544895
MGI SNP Detail
Chr6:29535539 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 157 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29612676
MGI SNP Detail
Chr6:29535588 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 206 bp downstream
SNP C/T C C C C C C C C C C T C C C C
rs259714691
MGI SNP Detail
Chr6:29535769 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 387 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223972367
MGI SNP Detail
Chr6:29535926 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 544 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs243845710
MGI SNP Detail
Chr6:29536098 Irf5 within coordinates of
Rr139798 within coordinates of
Tssr55278 716 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257232857
MGI SNP Detail
Chr6:29536336 Irf5 within coordinates of
Tssr55278 954 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218553821
MGI SNP Detail
Chr6:29536342 Irf5 within coordinates of
Tssr55278 960 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs237185531
MGI SNP Detail
Chr6:29536366 Irf5 within coordinates of
Tssr55278 984 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs584812035
MGI SNP Detail
Chr6:29536398 Irf5 within coordinates of
Tssr55278 1016 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261278762
MGI SNP Detail
Chr6:29536408 Irf5 within coordinates of
Rr148838 within coordinates of
Tssr55278 1026 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs29612678
MGI SNP Detail
Chr6:29536547 Irf5 within coordinates of
Rr148838 within coordinates of
Tssr55278 1165 bp downstream
SNP C/T T T T T T T C T T T C T T C T
rs258156314
MGI SNP Detail
Chr6:29536773 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1391 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263112549
MGI SNP Detail
Chr6:29536806 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1424 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232362854
MGI SNP Detail
Chr6:29536876 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1494 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs244667987
MGI SNP Detail
Chr6:29536893 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1511 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50072964
MGI SNP Detail
Chr6:29536913 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1531 bp downstream
SNP A A A A
rs213740626
MGI SNP Detail
Chr6:29537045 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1663 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230758032
MGI SNP Detail
Chr6:29537168 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1786 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242370212
MGI SNP Detail
Chr6:29537171 Irf5 within coordinates of
Rr134599 within coordinates of
Rr148838 within coordinates of
Tssr55278 1789 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217613798
MGI SNP Detail
Chr6:29537205 Irf5 within coordinates of
Rr148838 within coordinates of
Tssr55278 1823 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29612680
MGI SNP Detail
Chr6:29537257 Irf5 within coordinates of
Rr148838 within coordinates of
Tssr55278 1875 bp downstream
SNP C/T C C C C C T C C C T C C C C
rs29612682
MGI SNP Detail
Chr6:29537375 Irf5 within coordinates of
Rr148838 within coordinates of
Tssr55278 1993 bp downstream
SNP A/G A A A A A A G A A A G A A G A
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Showing SNP(s) 1 - 59 of 59

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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory