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Mouse SNP Summary
Symbol
Name
ID 		Tssr56506
transcription start site region 56506
MGI:5984273

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Showing SNP(s) 1 - 36 of 36

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228542651
MGI SNP Detail		 Chr6:52147928 Cpgi17416 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1999 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250286878
MGI SNP Detail		 Chr6:52147958 Cpgi17416 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1969 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs214593733
MGI SNP Detail		 Chr6:52148005 Cpgi17416 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1922 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232452475
MGI SNP Detail		 Chr6:52148148 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1779 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T T A T T T T T T T A T T T T
rs251349632
MGI SNP Detail		 Chr6:52148270 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1657 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs215992287
MGI SNP Detail		 Chr6:52148277 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1650 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C A C C C C
rs234548297
MGI SNP Detail		 Chr6:52148319 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1608 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G G C G G G G G G G C G G G G
rs253301518
MGI SNP Detail		 Chr6:52148339 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1588 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs226587749
MGI SNP Detail		 Chr6:52148414 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1513 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs236038432
MGI SNP Detail		 Chr6:52148428 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1499 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs256132212
MGI SNP Detail		 Chr6:52148432 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1495 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222118876
MGI SNP Detail		 Chr6:52148483 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1444 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239685037
MGI SNP Detail		 Chr6:52148521 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1406 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258823356
MGI SNP Detail		 Chr6:52148619 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1308 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs221447419
MGI SNP Detail		 Chr6:52148672 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1255 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G C G G G G G G G G G G G G G G C G G G G
rs241792972
MGI SNP Detail		 Chr6:52148674 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1253 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs266069454
MGI SNP Detail		 Chr6:52148683 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1244 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs228026259
MGI SNP Detail		 Chr6:52148849 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1078 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49171898
MGI SNP Detail		 Chr6:52148965 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 962 bp upstream
 SNP G/T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T
rs226479265
MGI SNP Detail		 Chr6:52148969 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 958 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs245573906
MGI SNP Detail		 Chr6:52148978 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 949 bp upstream
 SNP C/G C C C C G C G G G G C G C
rs216005937
MGI SNP Detail		 Chr6:52149056 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 871 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234364492
MGI SNP Detail		 Chr6:52149111 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 816 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254890023
MGI SNP Detail		 Chr6:52150011 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 80 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212511310
MGI SNP Detail		 Chr6:52150229 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 298 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235573641
MGI SNP Detail		 Chr6:52150318 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 387 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261483813
MGI SNP Detail		 Chr6:52150333 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 402 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs219448071
MGI SNP Detail		 Chr6:52150450 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 519 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs251391129
MGI SNP Detail		 Chr6:52150512 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 581 bp downstream
 SNP A/G A G
rs252751169
MGI SNP Detail		 Chr6:52150580 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 649 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221503248
MGI SNP Detail		 Chr6:52150635 Gm15050 within coordinates of
Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 704 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs241668332
MGI SNP Detail		 Chr6:52151062 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1131 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs581221867
MGI SNP Detail		 Chr6:52151114 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1183 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264254009
MGI SNP Detail		 Chr6:52151252 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1321 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219851481
MGI SNP Detail		 Chr6:52151389 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1458 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T T T T T T
rs241923257
MGI SNP Detail		 Chr6:52151758 Gm28308 within coordinates of
Hoxa3 within coordinates of
Rr146291 within coordinates of
Tssr56506 1827 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 36 of 36
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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