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Mouse SNP Summary
Symbol
Name
ID 		Tssr58209
transcription start site region 58209
MGI:5985976

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Showing SNP(s) 1 - 63 of 63

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250408776
MGI SNP Detail		 Chr6:113367503 Tssr58209 1968 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213538291
MGI SNP Detail		 Chr6:113367565 Tssr58209 1906 bp upstream
Ttll3 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240951878
MGI SNP Detail		 Chr6:113367570 Tssr58209 1901 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36559125
MGI SNP Detail		 Chr6:113367836 Rr142377 within coordinates of
Tssr58209 1635 bp upstream
Ttll3 within coordinates of
 SNP A/T T T T T T T A T T T A T T T T
rs226736965
MGI SNP Detail		 Chr6:113367954 Rr142377 within coordinates of
Tssr58209 1517 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36421030
MGI SNP Detail		 Chr6:113367996 Rr142377 within coordinates of
Tssr58209 1475 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G A G
rs250186310
MGI SNP Detail		 Chr6:113368151 Tssr58209 1320 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217987570
MGI SNP Detail		 Chr6:113368161 Tssr58209 1310 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239485342
MGI SNP Detail		 Chr6:113368231 Tssr58209 1240 bp upstream
Ttll3 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs37086955
MGI SNP Detail		 Chr6:113368243 Tssr58209 1228 bp upstream
Ttll3 within coordinates of
 SNP C/T C C T C C T C C T C C C T C C T C
rs37840975
MGI SNP Detail		 Chr6:113368245 Tssr58209 1226 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G A
rs36800924
MGI SNP Detail		 Chr6:113368360 Tssr58209 1111 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C T C C C T C C C C
rs29971862
MGI SNP Detail		 Chr6:113368459 Tssr58209 1012 bp upstream
Ttll3 within coordinates of
 SNP A/G G G A G A G A A G A G A A G A G
rs51173837
MGI SNP Detail		 Chr6:113368470 Tssr58209 1001 bp upstream
Ttll3 within coordinates of
 SNP A/T T T A
rs254771853
MGI SNP Detail		 Chr6:113368483 Tssr58209 988 bp upstream
Ttll3 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223609724
MGI SNP Detail		 Chr6:113368519 Tssr58209 952 bp upstream
Ttll3 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244722942
MGI SNP Detail		 Chr6:113368520 Tssr58209 951 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213506957
MGI SNP Detail		 Chr6:113368574 Tssr58209 897 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238581115
MGI SNP Detail		 Chr6:113368578 Tssr58209 893 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257200243
MGI SNP Detail		 Chr6:113368588 Tssr58209 883 bp upstream
Ttll3 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219206118
MGI SNP Detail		 Chr6:113368597 Tssr58209 874 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241689611
MGI SNP Detail		 Chr6:113368625 Tssr58209 846 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250152122
MGI SNP Detail		 Chr6:113368675 Tssr58209 796 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217873992
MGI SNP Detail		 Chr6:113368713 Tssr58209 758 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232477049
MGI SNP Detail		 Chr6:113368745 Tssr58209 726 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251034349
MGI SNP Detail		 Chr6:113368763 Tssr58209 708 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30353768
MGI SNP Detail		 Chr6:113368825 Tssr58209 646 bp upstream
Ttll3 within coordinates of
 SNP A/G G G A G A A G G A A G A G A A G A G
rs246775325
MGI SNP Detail		 Chr6:113368849 Tssr58209 622 bp upstream
Ttll3 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265599731
MGI SNP Detail		 Chr6:113368895 Tssr58209 576 bp upstream
Ttll3 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227209265
MGI SNP Detail		 Chr6:113368982 Tssr58209 489 bp upstream
Ttll3 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241168239
MGI SNP Detail		 Chr6:113369006 Rr145545 within coordinates of
Tssr58209 465 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs254661678
MGI SNP Detail		 Chr6:113369055 Rr145545 within coordinates of
Tssr58209 416 bp upstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223581277
MGI SNP Detail		 Chr6:113369074 Rr145545 within coordinates of
Tssr58209 397 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244689339
MGI SNP Detail		 Chr6:113369312 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 159 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262478156
MGI SNP Detail		 Chr6:113369313 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 158 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232915485
MGI SNP Detail		 Chr6:113369321 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 150 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252187919
MGI SNP Detail		 Chr6:113369338 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 133 bp upstream
Ttll3 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219053886
MGI SNP Detail		 Chr6:113369365 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 106 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233056044
MGI SNP Detail		 Chr6:113369393 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58208 within coordinates of
Tssr58209 78 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244268985
MGI SNP Detail		 Chr6:113369414 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58208 within coordinates of
Tssr58209 57 bp upstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211714856
MGI SNP Detail		 Chr6:113369426 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58208 within coordinates of
Tssr58209 45 bp upstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232431939
MGI SNP Detail		 Chr6:113369482 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 4 bp downstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs38764822
MGI SNP Detail		 Chr6:113369622 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 144 bp downstream
Ttll3 within coordinates of
 SNP A/C C C C C C C C C C C C C C A C
rs216457636
MGI SNP Detail		 Chr6:113369695 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 217 bp downstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs231495400
MGI SNP Detail		 Chr6:113369793 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 315 bp downstream
Ttll3 within coordinates of
 SNP C/T C T
rs258865609
MGI SNP Detail		 Chr6:113369846 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 368 bp downstream
Ttll3 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227510891
MGI SNP Detail		 Chr6:113369871 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 393 bp downstream
Ttll3 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs241138500
MGI SNP Detail		 Chr6:113369901 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 423 bp downstream
Ttll3 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs251017030
MGI SNP Detail		 Chr6:113369914 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 436 bp downstream
Ttll3 within coordinates of
 SNP A/G G A
rs218013023
MGI SNP Detail		 Chr6:113369919 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 441 bp downstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238478499
MGI SNP Detail		 Chr6:113370018 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 540 bp downstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36718482
MGI SNP Detail		 Chr6:113370074 Cpgi17842 within coordinates of
Rr145545 within coordinates of
Tssr58209 596 bp downstream
Ttll3 within coordinates of
 SNP C/T C C C C C C T C C C T C C T T
rs232589434
MGI SNP Detail		 Chr6:113370259 Tssr58209 781 bp downstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs248014164
MGI SNP Detail		 Chr6:113370532 Tssr58209 1054 bp downstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G A G G G G G G G A A A G G G G A A G G G G G G G G G G A G A A G G G G G G G G G G G G G G
rs38729123
MGI SNP Detail		 Chr6:113370594 Tssr58209 1116 bp downstream
Ttll3 within coordinates of
 SNP G/T T T G T G G G G G T G G G G G G T
rs230237357
MGI SNP Detail		 Chr6:113370683 Tssr58209 1205 bp downstream
Ttll3 within coordinates of
 SNP G/T T G
rs581013876
MGI SNP Detail		 Chr6:113370690 Tssr58209 1212 bp downstream
Ttll3 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs38106294
MGI SNP Detail		 Chr6:113370843 Tssr58209 1365 bp downstream
Ttll3 within coordinates of
 SNP A/T A A A A A A T A A A T A A T A
rs38556411
MGI SNP Detail		 Chr6:113371187 Tssr58209 1709 bp downstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs212079822
MGI SNP Detail		 Chr6:113371216 Tssr58209 1738 bp downstream
Ttll3 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226235411
MGI SNP Detail		 Chr6:113371217 Tssr58209 1739 bp downstream
Ttll3 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250420693
MGI SNP Detail		 Chr6:113371280 Tssr58209 1802 bp downstream
Ttll3 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216780997
MGI SNP Detail		 Chr6:113371440 Tssr58209 1962 bp downstream
Ttll3 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 63 of 63
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory