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Mouse SNP Summary
Symbol
Name
ID
Tssr58321
transcription start site region 58321
MGI:5986088

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Showing SNP(s) 1 - 55 of 55

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586816525
MGI SNP Detail
Alliance Variant
Chr6:115651175 Raf1 Intron
Tssr58321 1769 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580824775
MGI SNP Detail
Alliance Variant
Chr6:115651182 Raf1 Intron
Tssr58321 1762 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224571789
MGI SNP Detail
Alliance Variant
Chr6:115651222 Raf1 Intron
Tssr58321 1722 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240159906
MGI SNP Detail
Alliance Variant
Chr6:115651355 Raf1 Intron
Tssr58321 1589 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259609983
MGI SNP Detail
Alliance Variant
Chr6:115651357 Raf1 Intron
Tssr58321 1587 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31487044
MGI SNP Detail
Alliance Variant
Chr6:115651366 Raf1 Intron
Tssr58321 1578 bp upstream
SNP C/T T T C T T C C T C C T C T T
rs586603821
MGI SNP Detail
Alliance Variant
Chr6:115651374 Raf1 Intron
Tssr58321 1570 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581593726
MGI SNP Detail
Alliance Variant
Chr6:115651432 Raf1 Intron
Rr637015 within coordinates of
Tssr58321 1512 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248600796
MGI SNP Detail
Alliance Variant
Chr6:115651460 Raf1 Intron
Rr637015 within coordinates of
Tssr58321 1484 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261393212
MGI SNP Detail
Alliance Variant
Chr6:115651502 Raf1 Intron
Rr637015 within coordinates of
Tssr58321 1442 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31487045
MGI SNP Detail
Alliance Variant
Chr6:115651549 Raf1 Intron
Rr637015 within coordinates of
Tssr58321 1395 bp upstream
SNP C/G C C C C C C G C C C C C
rs229128111
MGI SNP Detail
Alliance Variant
Chr6:115651555 Raf1 Intron
Rr637015 within coordinates of
Tssr58321 1389 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs31487047
MGI SNP Detail
Alliance Variant
Chr6:115651716 Raf1 Intron
Tssr58321 1228 bp upstream
SNP C/T C C C C C C C C C C C C T
rs213439939
MGI SNP Detail
Alliance Variant
Chr6:115651752 Raf1 Intron
Tssr58321 1192 bp upstream
SNP C/T T C
rs31487049
MGI SNP Detail
Alliance Variant
Chr6:115651960 Raf1 Intron
Tssr58321 984 bp upstream
SNP A/G A A G A A G A A A A G A
rs237864301
MGI SNP Detail
Alliance Variant
Chr6:115651962 Raf1 Intron
Tssr58321 982 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246019354
MGI SNP Detail
Alliance Variant
Chr6:115652034 Raf1 Intron
Tssr58321 910 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216755172
MGI SNP Detail
Alliance Variant
Chr6:115652301 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 643 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs31487051
MGI SNP Detail
Alliance Variant
Chr6:115652412 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 532 bp upstream
SNP G/T T T G T T G T G T G T
rs248359299
MGI SNP Detail
Alliance Variant
Chr6:115652415 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 529 bp upstream
SNP C/G G G G G C G G G G G C C G G G G G G G C C G C G G G C C G G G G G C G G G G G C C G G C G G G G C C G G G
rs221985161
MGI SNP Detail
Alliance Variant
Chr6:115652466 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 478 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238375767
MGI SNP Detail
Alliance Variant
Chr6:115652539 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 405 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258138304
MGI SNP Detail
Alliance Variant
Chr6:115652547 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 397 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224630366
MGI SNP Detail
Alliance Variant
Chr6:115652549 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 395 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31487053
MGI SNP Detail
Alliance Variant
Chr6:115652554 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 390 bp upstream
SNP C/G G G C G G C C G C G C G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259571556
MGI SNP Detail
Alliance Variant
Chr6:115652593 Raf1 Intron
Rr637016 within coordinates of
Tssr58321 351 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222377549
MGI SNP Detail
Alliance Variant
Chr6:115652678 Cpgi17873 within coordinates of
Raf1 Intron
Raf1 mRNA-UTR
Rr637016 within coordinates of
Tssr58321 266 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs242547160
MGI SNP Detail
Alliance Variant
Chr6:115652752 Cpgi17873 within coordinates of
Raf1 Intron
Raf1 mRNA-UTR
Rr637016 within coordinates of
Tssr58321 192 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264571628
MGI SNP Detail
Alliance Variant
Chr6:115653479 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Raf1 mRNA-UTR
Rr399847 within coordinates of
Rr637018 within coordinates of
Tssr58321 514 bp downstream
Tssr62523 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228455108
MGI SNP Detail
Alliance Variant
Chr6:115653497 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Raf1 mRNA-UTR
Rr399847 within coordinates of
Rr637018 within coordinates of
Tssr58321 532 bp downstream
Tssr62523 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255032552
MGI SNP Detail
Alliance Variant
Chr6:115653562 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Raf1 mRNA-UTR
Rr399847 within coordinates of
Rr637018 within coordinates of
Tssr58321 597 bp downstream
Tssr62524 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224821899
MGI SNP Detail
Alliance Variant
Chr6:115653587 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Raf1 mRNA-UTR
Rr399847 within coordinates of
Rr637019 within coordinates of
Tssr58321 622 bp downstream
Tssr62525 within coordinates of
SNP C/G C G
rs262723096
MGI SNP Detail
Alliance Variant
Chr6:115653590 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Raf1 mRNA-UTR
Rr399847 within coordinates of
Rr637019 within coordinates of
Tssr58321 625 bp downstream
Tssr62525 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs226796552
MGI SNP Detail
Chr6:115653735 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Rr637019 within coordinates of
Tssr58321 770 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31487555
MGI SNP Detail
Chr6:115653736 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Rr637019 within coordinates of
Tssr58321 771 bp downstream
SNP A/G G G A G G A G A G A G
rs216722240
MGI SNP Detail
Chr6:115653758 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Rr637019 within coordinates of
Tssr58321 793 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31487557
MGI SNP Detail
Chr6:115653952 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Rr637019 within coordinates of
Tssr58321 987 bp downstream
SNP A/G A A G A A G G A A G A G A
rs249184118
MGI SNP Detail
Chr6:115654021 Cpgi17873 within coordinates of
D830050J10Rik within coordinates of
Rr637019 within coordinates of
Tssr58321 1056 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213419378
MGI SNP Detail
Chr6:115654274 D830050J10Rik within coordinates of
Tssr58321 1309 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236388051
MGI SNP Detail
Chr6:115654281 D830050J10Rik within coordinates of
Tssr58321 1316 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262589859
MGI SNP Detail
Chr6:115654311 D830050J10Rik within coordinates of
Tssr58321 1346 bp downstream
SNP A/C C C C C A C C C C C A A C C C C C C C C A C A C C C A A C C C C C A C C C C C A A C C A C C C C C A C C C
rs243430291
MGI SNP Detail
Chr6:115654350 D830050J10Rik within coordinates of
Tssr58321 1385 bp downstream
SNP A/C A C
rs224493945
MGI SNP Detail
Chr6:115654372 D830050J10Rik within coordinates of
Tssr58321 1407 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235158864
MGI SNP Detail
Chr6:115654496 D830050J10Rik within coordinates of
Tssr58321 1531 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254868476
MGI SNP Detail
Chr6:115654553 D830050J10Rik within coordinates of
Tssr58321 1588 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs222337329
MGI SNP Detail
Chr6:115654715 D830050J10Rik within coordinates of
Tssr58321 1750 bp downstream
SNP C/T C C C C T C C C C C T T C C C C C C C C T C T C C C T T C C C C C T C C C C C T T C C T C C C C C T C C C
rs242415476
MGI SNP Detail
Chr6:115654724 D830050J10Rik within coordinates of
Tssr58321 1759 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255185940
MGI SNP Detail
Chr6:115654814 D830050J10Rik within coordinates of
Tssr58321 1849 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs220753631
MGI SNP Detail
Chr6:115654840 D830050J10Rik within coordinates of
Tssr58321 1875 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242880583
MGI SNP Detail
Chr6:115654851 D830050J10Rik within coordinates of
Tssr58321 1886 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265245576
MGI SNP Detail
Chr6:115654873 D830050J10Rik within coordinates of
Tssr58321 1908 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs226757730
MGI SNP Detail
Chr6:115654874 D830050J10Rik within coordinates of
Tssr58321 1909 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239989640
MGI SNP Detail
Chr6:115654909 D830050J10Rik within coordinates of
Tssr58321 1944 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258920984
MGI SNP Detail
Chr6:115654928 D830050J10Rik within coordinates of
Tssr58321 1963 bp downstream
SNP C/T C C C C T C C C C C T T C C C C C C C C T C T C C C T T C C C C C T C C C C C T T C C T C C C C C T C C C
rs229225432
MGI SNP Detail
Chr6:115654942 D830050J10Rik within coordinates of
Tssr58321 1977 bp downstream
SNP A/G G G G G A G G G G G A A G G G G G G G G A G A G G G A A G G G G G A G G G G G A A G G A G G G G G A G G
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Showing SNP(s) 1 - 55 of 55

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory