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Mouse SNP Summary
Symbol
Name
ID 		Tssr58353
transcription start site region 58353
MGI:5986120

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Showing SNP(s) 1 - 60 of 60

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216626843
MGI SNP Detail		 Chr6:116148794 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1952 bp upstream
 SNP C/T C C C C T C C C C C T T C C C C C C C C T C T C C C T T C C C C C T C C C C C T T C C T C C C C C T C C C
rs235274089
MGI SNP Detail		 Chr6:116148850 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1896 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255555897
MGI SNP Detail		 Chr6:116148878 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1868 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578750235
MGI SNP Detail		 Chr6:116148904 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1842 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221346276
MGI SNP Detail		 Chr6:116148975 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1771 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243320144
MGI SNP Detail		 Chr6:116149054 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1692 bp upstream
 SNP A/G A A A A G A A A A A G G A A A A A A A G G A G A A A G G A A A A A G A A A A A G G A A G A A A A G G G A A
rs262622497
MGI SNP Detail		 Chr6:116149090 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1656 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221276000
MGI SNP Detail		 Chr6:116149099 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1647 bp upstream
 SNP C/T T T T T C T T T T T C C T T T T T T T T C T C T T T C C T T T T C T T T T T C C T T C T T T T T C T T T
rs241478649
MGI SNP Detail		 Chr6:116149144 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1602 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215593678
MGI SNP Detail		 Chr6:116149233 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1513 bp upstream
 SNP A/G A G
rs260936018
MGI SNP Detail		 Chr6:116149243 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1503 bp upstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A G A G G G A A G G G G G A G G G G G A A G G A G G G G G A G G G
rs223758565
MGI SNP Detail		 Chr6:116149416 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1330 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250815629
MGI SNP Detail		 Chr6:116149514 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1232 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261248668
MGI SNP Detail		 Chr6:116149629 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1117 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29967383
MGI SNP Detail		 Chr6:116149841 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 905 bp upstream
 SNP A/G A G A A G
rs250465692
MGI SNP Detail		 Chr6:116149874 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 872 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256008597
MGI SNP Detail		 Chr6:116149883 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 863 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226747219
MGI SNP Detail		 Chr6:116149897 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 849 bp upstream
 SNP C/T C C C C T C C C C C T T C C C C C C C T T C T C C C T T C C C C C T C C C C C T T C C T C C C C T T T C C
rs245827703
MGI SNP Detail		 Chr6:116149908 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 838 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216686885
MGI SNP Detail		 Chr6:116149917 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 829 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235167602
MGI SNP Detail		 Chr6:116149951 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 795 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252791346
MGI SNP Detail		 Chr6:116149953 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 793 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212888858
MGI SNP Detail		 Chr6:116149988 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 758 bp upstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A G A G G G A A G G G G G A G G G G G A A G G A G G G G G A G G G
rs238118818
MGI SNP Detail		 Chr6:116150061 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 685 bp upstream
 SNP A/C C C C C A C C C C C A A C C C C C C C C A C A C C C A A C C C C C A C C C C C A A C C A C C C C C A C C C
rs258052585
MGI SNP Detail		 Chr6:116150089 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 657 bp upstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A G A G G G A A G G G G G A G G G G G A A G G A G G G G A A A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580967586
MGI SNP Detail		 Chr6:116150332 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 414 bp upstream
 SNP A/G G G G G A G G G G G A A G G G G G G G G A G A G G G A A G G G G G A G G G G G A A G G A G G G G G A G G G
rs251691584
MGI SNP Detail		 Chr6:116150364 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 382 bp upstream
 SNP A/C A C
rs584280895
MGI SNP Detail		 Chr6:116150437 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 309 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578529921
MGI SNP Detail		 Chr6:116150505 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 241 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A G
rs581892281
MGI SNP Detail		 Chr6:116150508 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 238 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C A
rs586059742
MGI SNP Detail		 Chr6:116150511 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 235 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A G
rs579255988
MGI SNP Detail		 Chr6:116150605 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 141 bp upstream
 SNP A/G A A A A A A A A A G G A A A G A A G
rs582607553
MGI SNP Detail		 Chr6:116150690 Gm66805 within coordinates of
Rr145596 within coordinates of
Tmcc1 within coordinates of
Tssr58353 56 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G
rs223865599
MGI SNP Detail		 Chr6:116151612 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 847 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C A A
rs241639560
MGI SNP Detail		 Chr6:116151618 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 853 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T T
rs586076615
MGI SNP Detail		 Chr6:116151844 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1079 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30068250
MGI SNP Detail		 Chr6:116151846 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1081 bp downstream
 SNP A/G A G G A A G
rs579891546
MGI SNP Detail		 Chr6:116151915 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1150 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs583311682
MGI SNP Detail		 Chr6:116151953 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1188 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236988274
MGI SNP Detail		 Chr6:116152040 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1275 bp downstream
 SNP A/C A C
rs585728759
MGI SNP Detail		 Chr6:116152052 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1287 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245556060
MGI SNP Detail		 Chr6:116152068 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1303 bp downstream
 SNP C/T C C C C T C C C C C T T C C C C C C C C T C T C C C T T C C C C C T C C C C C T T C C T C C C C C T C C C
rs579601107
MGI SNP Detail		 Chr6:116152076 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1311 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255378143
MGI SNP Detail		 Chr6:116152077 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1312 bp downstream
 SNP A/T A T
rs108920812
MGI SNP Detail		 Chr6:116152228 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1463 bp downstream
 SNP A/T T A T
rs583031792
MGI SNP Detail		 Chr6:116152232 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1467 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs107758010
MGI SNP Detail		 Chr6:116152271 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1506 bp downstream
 SNP A/G G A G
rs587148909
MGI SNP Detail		 Chr6:116152279 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1514 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs580435258
MGI SNP Detail		 Chr6:116152325 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1560 bp downstream
 SNP A/C A A A A C A A A A A C C A A A A A A A A C A A A A A C C A A A A A A A A A A A C A A A C A A A A C A A A
rs258818207
MGI SNP Detail		 Chr6:116152380 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1615 bp downstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A G A G G G A A G G G G G A G G G G G A A G G A G G G G A A G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234997712
MGI SNP Detail		 Chr6:116152488 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1723 bp downstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A G A G G G A A G G G G G A G G G G G A A G G A G G G G G A G G G
rs587097056
MGI SNP Detail		 Chr6:116152507 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1742 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249130378
MGI SNP Detail		 Chr6:116152513 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1748 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581402858
MGI SNP Detail		 Chr6:116152552 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1787 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213183592
MGI SNP Detail		 Chr6:116152617 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1852 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236280414
MGI SNP Detail		 Chr6:116152621 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1856 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245761429
MGI SNP Detail		 Chr6:116152672 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1907 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215391380
MGI SNP Detail		 Chr6:116152673 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1908 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584465062
MGI SNP Detail		 Chr6:116152693 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1928 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T T
rs586874720
MGI SNP Detail		 Chr6:116152738 Gm66805 within coordinates of
Tmcc1 within coordinates of
Tssr58353 1973 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 60 of 60
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory