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Mouse SNP Summary
Symbol
Name
ID 		Tssr58776
transcription start site region 58776
MGI:5986543

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265992587
MGI SNP Detail		 Chr6:123238362 Gm67930 within coordinates of
Tssr58776 1998 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs234168035
MGI SNP Detail		 Chr6:123238363 Gm67930 within coordinates of
Tssr58776 1997 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs244231711
MGI SNP Detail		 Chr6:123238381 Gm67930 within coordinates of
Tssr58776 1979 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A G A
rs254732715
MGI SNP Detail		 Chr6:123238444 Gm67930 within coordinates of
Tssr58776 1916 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs225512313
MGI SNP Detail		 Chr6:123238450 Gm67930 within coordinates of
Tssr58776 1910 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G
rs244602464
MGI SNP Detail		 Chr6:123238451 Gm67930 within coordinates of
Tssr58776 1909 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T A T
rs587530285
MGI SNP Detail		 Chr6:123238466 Gm67930 within coordinates of
Tssr58776 1894 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580376909
MGI SNP Detail		 Chr6:123238472 Gm67930 within coordinates of
Tssr58776 1888 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G C G
rs583161622
MGI SNP Detail		 Chr6:123238479 Gm67930 within coordinates of
Tssr58776 1881 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs586135635
MGI SNP Detail		 Chr6:123238490 Gm67930 within coordinates of
Tssr58776 1870 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs581121906
MGI SNP Detail		 Chr6:123238509 Gm67930 within coordinates of
Tssr58776 1851 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs584308583
MGI SNP Detail		 Chr6:123238514 Gm67930 within coordinates of
Tssr58776 1846 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs587306261
MGI SNP Detail		 Chr6:123238518 Gm67930 within coordinates of
Tssr58776 1842 bp upstream
 SNP C/G/T G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G T G
rs215290551
MGI SNP Detail		 Chr6:123238525 Gm67930 within coordinates of
Tssr58776 1835 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C A A C
rs233047918
MGI SNP Detail		 Chr6:123238528 Gm67930 within coordinates of
Tssr58776 1832 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253930936
MGI SNP Detail		 Chr6:123238586 Gm67930 within coordinates of
Tssr58776 1774 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C T T C
rs218937262
MGI SNP Detail		 Chr6:123238590 Gm67930 within coordinates of
Tssr58776 1770 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234501314
MGI SNP Detail		 Chr6:123238615 Gm67930 within coordinates of
Tssr58776 1745 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244168396
MGI SNP Detail		 Chr6:123238617 Gm67930 within coordinates of
Tssr58776 1743 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213404175
MGI SNP Detail		 Chr6:123238729 Gm67930 within coordinates of
Tssr58776 1631 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G C G
rs48057990
MGI SNP Detail		 Chr6:123238750 Gm67930 within coordinates of
Tssr58776 1610 bp upstream
 SNP A/C C C C C C C A C C C A C C
rs252483100
MGI SNP Detail		 Chr6:123238761 Gm67930 within coordinates of
Tssr58776 1599 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs47932097
MGI SNP Detail		 Chr6:123238773 Gm67930 within coordinates of
Tssr58776 1587 bp upstream
 SNP C/T C C C C C C C C C C C C T C
rs224694740
MGI SNP Detail		 Chr6:123238784 Gm67930 within coordinates of
Tssr58776 1576 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs241548641
MGI SNP Detail		 Chr6:123238837 Gm67930 within coordinates of
Tssr58776 1523 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260590575
MGI SNP Detail		 Chr6:123238922 Gm67930 within coordinates of
Tssr58776 1438 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs227624022
MGI SNP Detail		 Chr6:123238995 Tssr58776 1365 bp upstream
Tssr63015 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A G A A
rs236105806
MGI SNP Detail
Alliance Variant		 Chr6:123239066 Clec4d mRNA-UTR
Tssr58776 1294 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T
rs46734525
MGI SNP Detail
Alliance Variant		 Chr6:123239099 Clec4d mRNA-UTR
Tssr58776 1261 bp upstream
 SNP A/G A A A A A A A A A A G A A
rs254892850
MGI SNP Detail
Alliance Variant		 Chr6:123239112 Clec4d mRNA-UTR
Tssr58776 1248 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46319364
MGI SNP Detail
Alliance Variant		 Chr6:123239122 Clec4d mRNA-UTR
Tssr58772 within coordinates of
Tssr58776 1238 bp upstream
 SNP A/G A A A A A A A A A G A A
rs45712746
MGI SNP Detail
Alliance Variant		 Chr6:123239144 Clec4d mRNA-UTR
Tssr58772 within coordinates of
Tssr58776 1216 bp upstream
 SNP G/T G G G G G G G G G G T G G G G
rs219503561
MGI SNP Detail
Alliance Variant		 Chr6:123239227 Clec4d mRNA-UTR
Tssr58776 1133 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A G A
rs238593173
MGI SNP Detail
Alliance Variant		 Chr6:123239242 Clec4d mRNA-UTR
Tssr58776 1118 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A C A
rs581369504
MGI SNP Detail
Alliance Variant		 Chr6:123239358 Clec4d Intron
Tssr58776 1002 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs584825312
MGI SNP Detail
Alliance Variant		 Chr6:123239362 Clec4d Intron
Tssr58776 998 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A
rs579350925
MGI SNP Detail
Alliance Variant		 Chr6:123239366 Clec4d Intron
Tssr58776 994 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs582733426
MGI SNP Detail
Alliance Variant		 Chr6:123239370 Clec4d Intron
Tssr58776 990 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G G G G G G G G G G A G G G A G A
rs584274578
MGI SNP Detail
Alliance Variant		 Chr6:123239416 Clec4d Intron
Tssr58776 944 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T C T
rs582341465
MGI SNP Detail
Alliance Variant		 Chr6:123239423 Clec4d Intron
Tssr58776 937 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C T T C
rs585370798
MGI SNP Detail
Alliance Variant		 Chr6:123239429 Clec4d Intron
Tssr58776 931 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs257307296
MGI SNP Detail
Alliance Variant		 Chr6:123239446 Clec4d Intron
Tssr58776 914 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs232499342
MGI SNP Detail
Alliance Variant		 Chr6:123239466 Clec4d Intron
Tssr58776 894 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs579115365
MGI SNP Detail
Alliance Variant		 Chr6:123239527 Clec4d Intron
Tssr58774 within coordinates of
Tssr58776 833 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G T G G G T G G G G G G T G G G T G G G T G T T T
rs259261012
MGI SNP Detail
Alliance Variant		 Chr6:123239549 Clec4d Intron
Tssr58774 within coordinates of
Tssr58776 811 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs264394026
MGI SNP Detail
Alliance Variant		 Chr6:123239550 Clec4d Intron
Tssr58774 within coordinates of
Tssr58776 810 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs228164072
MGI SNP Detail
Alliance Variant		 Chr6:123239575 Clec4d Intron
Tssr58774 within coordinates of
Tssr58776 785 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs244131234
MGI SNP Detail
Alliance Variant		 Chr6:123239585 Clec4d Intron
Tssr58776 775 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C A C
rs213556084
MGI SNP Detail
Alliance Variant		 Chr6:123239630 Clec4d Intron
Tssr58775 within coordinates of
Tssr58776 730 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs232497609
MGI SNP Detail
Alliance Variant		 Chr6:123239672 Clec4d Intron
Tssr58776 688 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246285775
MGI SNP Detail
Alliance Variant		 Chr6:123239703 Clec4d Intron
Tssr58776 657 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs49441748
MGI SNP Detail
Alliance Variant		 Chr6:123239716 Clec4d Intron
Tssr58776 644 bp upstream
 SNP C/T C C C C C C C C C C T C C
rs239113286
MGI SNP Detail
Alliance Variant		 Chr6:123239768 Clec4d Intron
Tssr58776 592 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A T A
rs48556975
MGI SNP Detail
Alliance Variant		 Chr6:123239824 Clec4d Intron
Tssr58776 536 bp upstream
 SNP A/G A A A A A A G A A A A A A G
rs227121945
MGI SNP Detail
Alliance Variant		 Chr6:123240009 Clec4d Intron
Tssr58776 351 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs230360857
MGI SNP Detail
Alliance Variant		 Chr6:123240046 Clec4d Intron
Tssr58776 314 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs249146275
MGI SNP Detail
Alliance Variant		 Chr6:123240090 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 270 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219642230
MGI SNP Detail
Alliance Variant		 Chr6:123240103 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 257 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A A G G A
rs238552796
MGI SNP Detail
Alliance Variant		 Chr6:123240158 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 202 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs263244206
MGI SNP Detail
Alliance Variant		 Chr6:123240172 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 188 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T A T
rs225425270
MGI SNP Detail
Alliance Variant		 Chr6:123240176 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 184 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247491292
MGI SNP Detail
Alliance Variant		 Chr6:123240198 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 162 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T G T
rs266165295
MGI SNP Detail
Alliance Variant		 Chr6:123240207 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 153 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C T C C C T C C C C C C T C C C T C C C C C C C T
rs227583375
MGI SNP Detail
Alliance Variant		 Chr6:123240219 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 141 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244283933
MGI SNP Detail
Alliance Variant		 Chr6:123240260 Clec4d Intron
Gm68468 within coordinates of
Tssr58776 100 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C A C C C A C C C C C C C A
rs45844813
MGI SNP Detail
Alliance Variant		 Chr6:123240276 Clec4d Intron
Tssr58776 84 bp upstream
Tssr63016 within coordinates of
 SNP C/G G G G G G G C G G G C G G C
rs226484117
MGI SNP Detail
Alliance Variant		 Chr6:123240286 Clec4d Intron
Tssr58776 74 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs246350089
MGI SNP Detail
Alliance Variant		 Chr6:123240297 Clec4d Intron
Tssr58776 63 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs216364425
MGI SNP Detail
Alliance Variant		 Chr6:123240298 Clec4d Intron
Tssr58776 62 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A G A
rs233814547
MGI SNP Detail
Alliance Variant		 Chr6:123240335 Clec4d Intron
Tssr58776 25 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G G G G G A G G G A G G G G G G G A
rs254359066
MGI SNP Detail
Alliance Variant		 Chr6:123240336 Clec4d Intron
Tssr58776 24 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T G T
rs211822821
MGI SNP Detail
Alliance Variant		 Chr6:123240360 Clec4d Intron
Tssr58776 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G A G G G A G G G G G G A G G G A G G G A G G A A
rs230329981
MGI SNP Detail
Alliance Variant		 Chr6:123240376 Clec4d Intron
Tssr58776 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs249327366
MGI SNP Detail
Alliance Variant		 Chr6:123240381 Clec4d Intron
Tssr58776 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A G A A A G A A A A A A G A A A G A A A G A A G G
rs214000471
MGI SNP Detail
Alliance Variant		 Chr6:123240392 Clec4d Intron
Tssr58776 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232340552
MGI SNP Detail
Alliance Variant		 Chr6:123240394 Clec4d Intron
Tssr58776 1 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T A T
rs263061726
MGI SNP Detail
Alliance Variant		 Chr6:123240395 Clec4d Intron
Tssr58776 2 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A T A
rs52322562
MGI SNP Detail
Alliance Variant		 Chr6:123240414 Clec4d Intron
Tssr58776 21 bp downstream
 SNP C/T C C C C C C C C C C C C T C
rs225119704
MGI SNP Detail
Alliance Variant		 Chr6:123240454 Clec4d Intron
Tssr58776 61 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A A C A A A A A A C A A A C A A A C A A C C
rs250409472
MGI SNP Detail
Alliance Variant		 Chr6:123240467 Clec4d Intron
Tssr58776 74 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C T C C C T C C C C C C T C C C T C C C T C C T T
rs50437978
MGI SNP Detail
Alliance Variant		 Chr6:123240517 Clec4d Intron
Tssr58776 124 bp downstream
 SNP C/T C C C C C C T C C C C C T
rs218256477
MGI SNP Detail
Alliance Variant		 Chr6:123240549 Clec4d Intron
Tssr58776 156 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs238030647
MGI SNP Detail
Alliance Variant		 Chr6:123240594 Clec4d Intron
Tssr58776 201 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs257470712
MGI SNP Detail
Alliance Variant		 Chr6:123240598 Clec4d Intron
Tssr58776 205 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G T G
rs582611589
MGI SNP Detail
Alliance Variant		 Chr6:123240606 Clec4d Intron
Tssr58776 213 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs226543522
MGI SNP Detail
Alliance Variant		 Chr6:123240636 Clec4d Intron
Tssr58776 243 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C A C
rs245009089
MGI SNP Detail
Alliance Variant		 Chr6:123240646 Clec4d Intron
Tssr58776 253 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs265689341
MGI SNP Detail
Alliance Variant		 Chr6:123240662 Clec4d Intron
Tssr58776 269 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G
rs47565376
MGI SNP Detail
Alliance Variant		 Chr6:123240686 Clec4d Intron
Tssr58776 293 bp downstream
Tssr58777 within coordinates of
 SNP A/G A A A A A A A A A G A A A
rs232898449
MGI SNP Detail
Alliance Variant		 Chr6:123240730 Clec4d Intron
Tssr58776 337 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs259950742
MGI SNP Detail
Alliance Variant		 Chr6:123240772 Clec4d Intron
Tssr58776 379 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A T A
rs47894168
MGI SNP Detail
Alliance Variant		 Chr6:123240790 Clec4d Intron
Tssr58776 397 bp downstream
 SNP C/T C C C C C C T C C C C C C T
rs223934151
MGI SNP Detail
Alliance Variant		 Chr6:123240791 Clec4d Intron
Tssr58776 398 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs243527652
MGI SNP Detail
Alliance Variant		 Chr6:123240823 Clec4d Intron
Tssr58776 430 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49100128
MGI SNP Detail
Alliance Variant		 Chr6:123240840 Clec4d Intron
Tssr58776 447 bp downstream
Tssr58778 within coordinates of
 SNP G/T G G G G G G G G G G G G G T G
rs232492928
MGI SNP Detail
Alliance Variant		 Chr6:123240889 Clec4d Intron
Tssr58776 496 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T G T
rs258891129
MGI SNP Detail
Alliance Variant		 Chr6:123240899 Clec4d Intron
Tssr58776 506 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs217521193
MGI SNP Detail
Alliance Variant		 Chr6:123240900 Clec4d Intron
Tssr58776 507 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T A T
rs50762209
MGI SNP Detail
Alliance Variant		 Chr6:123240926 Clec4d Intron
Tssr58776 533 bp downstream
 SNP G/T G G G G G G G G G G T G G G G
rs586013455
MGI SNP Detail
Alliance Variant		 Chr6:123240962 Clec4d Intron
Tssr58776 569 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 100 of 146
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/29/2025
MGI 6.24 		The Jackson Laboratory
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