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Mouse SNP Summary
Symbol
Name
ID 		Tssr61012
transcription start site region 61012
MGI:5988779

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265367163
MGI SNP Detail		 Chr6:52201153 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1992 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs227674620
MGI SNP Detail		 Chr6:52201165 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1980 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs247493602
MGI SNP Detail		 Chr6:52201168 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1977 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217053977
MGI SNP Detail		 Chr6:52201468 Cpgi17430 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1677 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229554551
MGI SNP Detail		 Chr6:52201493 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1652 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs252760566
MGI SNP Detail		 Chr6:52201503 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1642 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212859911
MGI SNP Detail		 Chr6:52201507 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1638 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238331445
MGI SNP Detail		 Chr6:52201578 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61006 within coordinates of
Tssr61012 1567 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258065020
MGI SNP Detail		 Chr6:52201605 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1540 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215337147
MGI SNP Detail		 Chr6:52201621 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1524 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232784964
MGI SNP Detail		 Chr6:52201655 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1490 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251836809
MGI SNP Detail		 Chr6:52201771 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1374 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs585393850
MGI SNP Detail		 Chr6:52201831 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1314 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587505998
MGI SNP Detail		 Chr6:52201931 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1214 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248255790
MGI SNP Detail		 Chr6:52201942 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1203 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs580866098
MGI SNP Detail		 Chr6:52201953 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1192 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs49637788
MGI SNP Detail		 Chr6:52201997 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1148 bp downstream
 SNP A/G A A A A A A A A A G A
rs221013413
MGI SNP Detail		 Chr6:52202025 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1120 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245570872
MGI SNP Detail		 Chr6:52202085 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1060 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs50768324
MGI SNP Detail		 Chr6:52202099 Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1046 bp downstream
 SNP G/T T G T G T T T G G G G
rs227131779
MGI SNP Detail		 Chr6:52202119 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 1026 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs241553340
MGI SNP Detail		 Chr6:52202155 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 990 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs48024775
MGI SNP Detail		 Chr6:52202388 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 757 bp downstream
 SNP A/G A A A A A A A A A A G A
rs235739509
MGI SNP Detail		 Chr6:52202569 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 576 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs46910944
MGI SNP Detail		 Chr6:52202842 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61009 within coordinates of
Tssr61012 303 bp downstream
 SNP C/T C T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213684618
MGI SNP Detail		 Chr6:52202929 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61010 within coordinates of
Tssr61012 216 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs51160505
MGI SNP Detail		 Chr6:52203019 Cpgi17431 within coordinates of
Gm57855 within coordinates of
Hoxa9 within coordinates of
Rr146300 within coordinates of
Tssr61012 126 bp downstream
 SNP A/G A G A G A A G G G G G
rs256364329
MGI SNP Detail		 Chr6:52203450 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 274 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs47663907
MGI SNP Detail		 Chr6:52203730 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 554 bp upstream
 SNP C/T T T T T T T T T C T T C T
rs233689715
MGI SNP Detail		 Chr6:52203864 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 688 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251847237
MGI SNP Detail		 Chr6:52203869 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 693 bp upstream
 SNP A/C/G A A A A A A A A A A A A A A A A A A A G A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs48094681
MGI SNP Detail		 Chr6:52203936 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 760 bp upstream
 SNP A/G G G G G G G G G G A G G G G
rs216528570
MGI SNP Detail		 Chr6:52204140 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 964 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T T T T T T T T A T T T T T T T A T T T T
rs243036544
MGI SNP Detail		 Chr6:52204151 Gm57855 within coordinates of
Rr146300 within coordinates of
Tssr61012 975 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255502788
MGI SNP Detail		 Chr6:52204220 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1044 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G T G G G G
rs221017135
MGI SNP Detail		 Chr6:52204246 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1070 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242799931
MGI SNP Detail		 Chr6:52204339 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1163 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs584391193
MGI SNP Detail		 Chr6:52204377 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1201 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs30312708
MGI SNP Detail		 Chr6:52204381 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1205 bp upstream
 SNP C/T T C C C
rs578330745
MGI SNP Detail		 Chr6:52204390 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1214 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220826829
MGI SNP Detail		 Chr6:52204422 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1246 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs29872040
MGI SNP Detail		 Chr6:52204436 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1260 bp upstream
 SNP C/T C T T
rs260872942
MGI SNP Detail		 Chr6:52204450 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1274 bp upstream
 SNP C/G G G G C G G G G G G C G C C G G G C C C G C C G G C G
rs226999877
MGI SNP Detail		 Chr6:52204465 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1289 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G
rs244336316
MGI SNP Detail		 Chr6:52204563 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1387 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262177271
MGI SNP Detail		 Chr6:52204696 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1520 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230659883
MGI SNP Detail		 Chr6:52204735 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1559 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs244634823
MGI SNP Detail		 Chr6:52204805 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1629 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49300437
MGI SNP Detail		 Chr6:52204811 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1635 bp upstream
 SNP A/G A A A A A A A A A G A A G A
rs227751707
MGI SNP Detail		 Chr6:52204915 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1739 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246824675
MGI SNP Detail		 Chr6:52205042 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1866 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219291469
MGI SNP Detail		 Chr6:52205083 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1907 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs240216715
MGI SNP Detail		 Chr6:52205094 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1918 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G G G G G G G G C G G G G G G G G G G G G
rs252375315
MGI SNP Detail		 Chr6:52205151 Gm57855 within coordinates of
Gm68361 within coordinates of
Rr146300 within coordinates of
Tssr61012 1975 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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