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Mouse SNP Summary
Symbol
Name
ID 		Tssr61090
transcription start site region 61090
MGI:5988857

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228625846
MGI SNP Detail		 Chr6:54726964 Gm66973 within coordinates of
Tssr61090 1919 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs245178801
MGI SNP Detail		 Chr6:54726966 Gm66973 within coordinates of
Tssr61090 1917 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30094238
MGI SNP Detail		 Chr6:54727008 Gm66973 within coordinates of
Tssr61090 1875 bp downstream
 SNP A/T T T T T T T A T T T A T T A T
rs226626795
MGI SNP Detail		 Chr6:54727043 Gm66973 within coordinates of
Tssr61090 1840 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30094240
MGI SNP Detail		 Chr6:54727083 Gm66973 within coordinates of
Tssr61090 1800 bp downstream
 SNP G/T T T T T T T G G T T T T G T G T T
rs30094242
MGI SNP Detail		 Chr6:54727107 Gm66973 within coordinates of
Tssr61090 1776 bp downstream
 SNP C/T C C C C C C C C C C C T C
rs216268282
MGI SNP Detail		 Chr6:54727169 Gm66973 within coordinates of
Tssr61090 1714 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs228827643
MGI SNP Detail		 Chr6:54727190 Gm66973 within coordinates of
Tssr61090 1693 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs255092413
MGI SNP Detail		 Chr6:54727199 Gm66973 within coordinates of
Tssr61090 1684 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs212540701
MGI SNP Detail		 Chr6:54727213 Gm66973 within coordinates of
Tssr61090 1670 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30120487
MGI SNP Detail		 Chr6:54727361 Gm66973 within coordinates of
Tssr61090 1522 bp downstream
 SNP A/C C C A C C C
rs261885854
MGI SNP Detail		 Chr6:54727441 Gm66973 within coordinates of
Tssr61090 1442 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29925647
MGI SNP Detail		 Chr6:54727449 Gm66973 within coordinates of
Tssr61090 1434 bp downstream
 SNP C/T T T T C T T
rs30095124
MGI SNP Detail		 Chr6:54727482 Gm66973 within coordinates of
Tssr61090 1401 bp downstream
 SNP C/G C C C G C G
rs30169722
MGI SNP Detail		 Chr6:54727602 Gm66973 within coordinates of
Tssr61090 1281 bp downstream
 SNP A/G G G G A G G G
rs221761967
MGI SNP Detail		 Chr6:54727770 Gm66973 within coordinates of
Tssr61090 1113 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs241502201
MGI SNP Detail		 Chr6:54727889 Gm66973 within coordinates of
Tssr61090 994 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255476123
MGI SNP Detail		 Chr6:54727913 Gm66973 within coordinates of
Tssr61090 970 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs29961896
MGI SNP Detail		 Chr6:54727942 Gm66973 within coordinates of
Tssr61090 941 bp downstream
 SNP A/G A A G A A A
rs243043696
MGI SNP Detail		 Chr6:54728024 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 859 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265115510
MGI SNP Detail		 Chr6:54728129 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 754 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29917876
MGI SNP Detail		 Chr6:54728164 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 719 bp downstream
 SNP A/G G G A G G G
rs240713364
MGI SNP Detail		 Chr6:54728169 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 714 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259963457
MGI SNP Detail		 Chr6:54728173 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 710 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228592646
MGI SNP Detail		 Chr6:54728182 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 701 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260516762
MGI SNP Detail		 Chr6:54728184 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 699 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212447137
MGI SNP Detail		 Chr6:54728187 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 696 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30464589
MGI SNP Detail		 Chr6:54728248 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 635 bp downstream
 SNP C/T C C T C C C
rs251013120
MGI SNP Detail		 Chr6:54728256 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 627 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214159440
MGI SNP Detail		 Chr6:54728283 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 600 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232625865
MGI SNP Detail		 Chr6:54728365 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 518 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245789612
MGI SNP Detail		 Chr6:54728398 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 485 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30378364
MGI SNP Detail		 Chr6:54728429 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 454 bp downstream
 SNP G/T G G T G G G
rs239985148
MGI SNP Detail		 Chr6:54728495 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 388 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260869791
MGI SNP Detail		 Chr6:54728496 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 387 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221552242
MGI SNP Detail		 Chr6:54728514 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 369 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237879439
MGI SNP Detail		 Chr6:54728524 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 359 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30512714
MGI SNP Detail		 Chr6:54728533 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 350 bp downstream
 SNP A/C A A C A A A
rs220925463
MGI SNP Detail		 Chr6:54728540 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 343 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240651711
MGI SNP Detail		 Chr6:54728567 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 316 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30095126
MGI SNP Detail		 Chr6:54728568 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 315 bp downstream
 SNP C/T T T T C T C
rs264747187
MGI SNP Detail		 Chr6:54728939 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 52 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229340521
MGI SNP Detail		 Chr6:54729244 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 357 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255759078
MGI SNP Detail		 Chr6:54729291 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 404 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256587725
MGI SNP Detail		 Chr6:54729397 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 510 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs227094499
MGI SNP Detail		 Chr6:54729422 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 535 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245735830
MGI SNP Detail		 Chr6:54729459 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 572 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216505511
MGI SNP Detail		 Chr6:54729491 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 604 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242657134
MGI SNP Detail		 Chr6:54729574 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 687 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248893077
MGI SNP Detail		 Chr6:54729601 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 714 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212881850
MGI SNP Detail		 Chr6:54729652 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 765 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs236157944
MGI SNP Detail		 Chr6:54729701 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 814 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252038847
MGI SNP Detail		 Chr6:54729718 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 831 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220865527
MGI SNP Detail		 Chr6:54729721 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 834 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234702071
MGI SNP Detail		 Chr6:54729765 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 878 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs253765130
MGI SNP Detail		 Chr6:54729769 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 882 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222897062
MGI SNP Detail		 Chr6:54729886 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 999 bp upstream
 SNP C/T C T C C C C T C C T C C T T T C T C T T T C T C
rs30095128
MGI SNP Detail		 Chr6:54729933 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1046 bp upstream
 SNP C/T C C C C T C T C T C
rs261539604
MGI SNP Detail		 Chr6:54730149 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1262 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221205472
MGI SNP Detail		 Chr6:54730277 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1390 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243553528
MGI SNP Detail		 Chr6:54730278 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1391 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs256750626
MGI SNP Detail		 Chr6:54730296 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1409 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs49486215
MGI SNP Detail		 Chr6:54730376 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1489 bp upstream
 SNP A A A A
rs51444876
MGI SNP Detail		 Chr6:54730382 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1495 bp upstream
 SNP T T T T
rs48719676
MGI SNP Detail		 Chr6:54730386 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1499 bp upstream
 SNP A A A A
rs582416963
MGI SNP Detail		 Chr6:54730591 Gm66973 within coordinates of
Rr140760 within coordinates of
Tssr61090 1704 bp upstream
 SNP A/C C C C A C C C C A A A A C A A C C A C C C C A C C C C A C C C C C A C C C C C C A C C C
rs586098089
MGI SNP Detail		 Chr6:54730625 Gm66973 within coordinates of
Tssr61090 1738 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578594706
MGI SNP Detail		 Chr6:54730633 Gm66973 within coordinates of
Tssr61090 1746 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C A C C C C C C C C C C C C C A C C C C
rs233677592
MGI SNP Detail		 Chr6:54730717 Gm66973 within coordinates of
Tssr61090 1830 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs582129082
MGI SNP Detail		 Chr6:54730756 Gm66973 within coordinates of
Tssr61090 1869 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252220438
MGI SNP Detail		 Chr6:54730855 Gm66973 within coordinates of
Tssr61090 1968 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 71 of 71
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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