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Mouse SNP Summary
Symbol
Name
ID 		Tssr61174
transcription start site region 61174
MGI:5988941

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227263884
MGI SNP Detail		 Chr6:58882042 Herc3 within coordinates of
Tssr61174 1996 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245620261
MGI SNP Detail		 Chr6:58882093 Herc3 within coordinates of
Tssr61174 1945 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213490929
MGI SNP Detail		 Chr6:58882287 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1751 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237263573
MGI SNP Detail		 Chr6:58882389 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1649 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255443828
MGI SNP Detail		 Chr6:58882718 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1320 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219219117
MGI SNP Detail		 Chr6:58882888 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1150 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs239547405
MGI SNP Detail		 Chr6:58882941 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1097 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252133938
MGI SNP Detail		 Chr6:58882986 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 1052 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220912127
MGI SNP Detail		 Chr6:58883128 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 910 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249987555
MGI SNP Detail		 Chr6:58883318 Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 720 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221924162
MGI SNP Detail		 Chr6:58883515 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 523 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244518222
MGI SNP Detail		 Chr6:58883548 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr56753 within coordinates of
Tssr61174 490 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264594428
MGI SNP Detail		 Chr6:58883569 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 469 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234634701
MGI SNP Detail		 Chr6:58883800 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 238 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs241693506
MGI SNP Detail		 Chr6:58883821 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 217 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259738881
MGI SNP Detail		 Chr6:58883850 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 188 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49797894
MGI SNP Detail		 Chr6:58883862 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 176 bp downstream
 SNP C/T C C T
rs227134565
MGI SNP Detail		 Chr6:58883866 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 172 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245492117
MGI SNP Detail		 Chr6:58883913 Cpgi17490 within coordinates of
Herc3 within coordinates of
Nap1l5 within coordinates of
Rr146376 within coordinates of
Tssr61174 125 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs6201838
MGI SNP Detail		 Chr6:58884372 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 289 bp upstream
 SNP C/T T C
rs228565019
MGI SNP Detail		 Chr6:58884387 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 304 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs252592709
MGI SNP Detail		 Chr6:58884432 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 349 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219145386
MGI SNP Detail		 Chr6:58884445 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 362 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6202344
MGI SNP Detail		 Chr6:58884466 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 383 bp upstream
 SNP C/T C T
rs6215207
MGI SNP Detail		 Chr6:58884554 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 471 bp upstream
 SNP A/G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6215336
MGI SNP Detail		 Chr6:58884630 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 547 bp upstream
 SNP G/T T G
rs6215337
MGI SNP Detail		 Chr6:58884631 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 548 bp upstream
 SNP A/C C A
rs232298391
MGI SNP Detail		 Chr6:58884705 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 622 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs6215876
MGI SNP Detail		 Chr6:58884713 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 630 bp upstream
 SNP A/G A A A A A A A G G A A A A G A
rs6216349
MGI SNP Detail		 Chr6:58884755 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 672 bp upstream
 SNP A/T T A
rs6216389
MGI SNP Detail		 Chr6:58884773 Herc3 within coordinates of
Rr146376 within coordinates of
Tssr61174 690 bp upstream
 SNP G/T T G
rs6216912
MGI SNP Detail		 Chr6:58884842 Herc3 within coordinates of
Tssr61174 759 bp upstream
 SNP G/T T G
rs226188914
MGI SNP Detail		 Chr6:58884876 Herc3 within coordinates of
Tssr61174 793 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30344220
MGI SNP Detail		 Chr6:58884927 Herc3 within coordinates of
Tssr61174 844 bp upstream
 SNP A/G G G G G G G A G G G G G G
rs259604296
MGI SNP Detail		 Chr6:58884934 Herc3 within coordinates of
Tssr61174 851 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220692484
MGI SNP Detail		 Chr6:58885068 Herc3 within coordinates of
Tssr61174 985 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs30344222
MGI SNP Detail		 Chr6:58885108 Herc3 within coordinates of
Tssr61174 1025 bp upstream
 SNP C/T C C C C C C C C C C C T C
rs580729570
MGI SNP Detail		 Chr6:58885143 Herc3 within coordinates of
Tssr61174 1060 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30345174
MGI SNP Detail		 Chr6:58885191 Herc3 within coordinates of
Tssr61174 1108 bp upstream
 SNP C/T T T T T T T T T T T T C T
rs229125315
MGI SNP Detail		 Chr6:58885364 Herc3 within coordinates of
Tssr61174 1281 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs249035692
MGI SNP Detail		 Chr6:58885372 Herc3 within coordinates of
Tssr61174 1289 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs266091690
MGI SNP Detail		 Chr6:58885382 Herc3 within coordinates of
Tssr61174 1299 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228391624
MGI SNP Detail		 Chr6:58885430 Herc3 within coordinates of
Tssr61174 1347 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245926465
MGI SNP Detail		 Chr6:58885444 Herc3 within coordinates of
Tssr61174 1361 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A T A A A A A A T A A A A A A A T A A A A
rs215280774
MGI SNP Detail		 Chr6:58885446 Herc3 within coordinates of
Tssr61174 1363 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232181640
MGI SNP Detail		 Chr6:58885460 Herc3 within coordinates of
Tssr61174 1377 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs255528791
MGI SNP Detail		 Chr6:58885475 Herc3 within coordinates of
Tssr61174 1392 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584407996
MGI SNP Detail		 Chr6:58885515 Herc3 within coordinates of
Tssr61174 1432 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212998297
MGI SNP Detail		 Chr6:58885603 Herc3 within coordinates of
Tssr61174 1520 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236650134
MGI SNP Detail		 Chr6:58885605 Herc3 within coordinates of
Tssr61174 1522 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30345176
MGI SNP Detail		 Chr6:58885626 Herc3 within coordinates of
Tssr61174 1543 bp upstream
 SNP A/C A A A A A A A A A A A C A
rs226471432
MGI SNP Detail		 Chr6:58885627 Herc3 within coordinates of
Tssr61174 1544 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235192905
MGI SNP Detail		 Chr6:58885636 Herc3 within coordinates of
Tssr61174 1553 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253198700
MGI SNP Detail		 Chr6:58885729 Herc3 within coordinates of
Tssr61174 1646 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220752378
MGI SNP Detail		 Chr6:58885733 Herc3 within coordinates of
Tssr61174 1650 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239370382
MGI SNP Detail		 Chr6:58885736 Herc3 within coordinates of
Tssr61174 1653 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265023940
MGI SNP Detail		 Chr6:58885760 Herc3 within coordinates of
Tssr61174 1677 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221204447
MGI SNP Detail		 Chr6:58885801 Herc3 within coordinates of
Tssr61174 1718 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48738552
MGI SNP Detail		 Chr6:58885868 Herc3 within coordinates of
Tssr61174 1785 bp upstream
 SNP C/T T T T T T T T T T C T T C T
rs50905806
MGI SNP Detail		 Chr6:58885896 Herc3 within coordinates of
Tssr61174 1813 bp upstream
 SNP C/T C C C C C C C C T C C T C
rs228206044
MGI SNP Detail		 Chr6:58885912 Herc3 within coordinates of
Tssr61174 1829 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245981620
MGI SNP Detail		 Chr6:58886028 Herc3 within coordinates of
Tssr61174 1945 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 62 of 62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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