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Mouse SNP Summary
Symbol
Name
ID 		Tssr62004
transcription start site region 62004
MGI:5989771

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Showing SNP(s) 1 - 53 of 53

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215727792
MGI SNP Detail		 Chr6:89291778 Gm26811 within coordinates of
Tssr62004 1953 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235063613
MGI SNP Detail		 Chr6:89291779 Gm26811 within coordinates of
Tssr62004 1952 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254757747
MGI SNP Detail		 Chr6:89291828 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1903 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223710537
MGI SNP Detail		 Chr6:89291844 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1887 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236675667
MGI SNP Detail		 Chr6:89291845 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1886 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256692725
MGI SNP Detail		 Chr6:89291852 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1879 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs222181859
MGI SNP Detail		 Chr6:89291877 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1854 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs244255389
MGI SNP Detail		 Chr6:89291920 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1811 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262993740
MGI SNP Detail		 Chr6:89291967 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1764 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221587110
MGI SNP Detail		 Chr6:89292055 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1676 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587298251
MGI SNP Detail		 Chr6:89292077 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1654 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30413051
MGI SNP Detail		 Chr6:89292096 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1635 bp downstream
 SNP C/T T T C C T T C T T C T T T C T T
rs259694704
MGI SNP Detail		 Chr6:89292125 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1606 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223398141
MGI SNP Detail		 Chr6:89292182 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1549 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244966411
MGI SNP Detail		 Chr6:89292203 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1528 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262368494
MGI SNP Detail		 Chr6:89292214 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1517 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30505863
MGI SNP Detail		 Chr6:89292285 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1446 bp downstream
 SNP C/G G G G C C G G C G G C G G C G G
rs251998012
MGI SNP Detail		 Chr6:89292293 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1438 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs215687293
MGI SNP Detail		 Chr6:89292310 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1421 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30943640
MGI SNP Detail		 Chr6:89292382 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1349 bp downstream
 SNP A/G A A A A A A G A A G A A A A
rs217668039
MGI SNP Detail		 Chr6:89292475 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1256 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs234979674
MGI SNP Detail		 Chr6:89292479 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 1252 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261760542
MGI SNP Detail		 Chr6:89292740 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 991 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214312429
MGI SNP Detail		 Chr6:89292769 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 962 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239067612
MGI SNP Detail		 Chr6:89292887 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 844 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251250259
MGI SNP Detail		 Chr6:89292913 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 818 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221493395
MGI SNP Detail		 Chr6:89292995 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 736 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240968449
MGI SNP Detail		 Chr6:89293016 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 715 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C C T T T T C T T T T T C T T T T T T T T T T T C T T C T T T T
rs253363664
MGI SNP Detail		 Chr6:89293203 Gm26811 within coordinates of
Rr141611 within coordinates of
Tssr62004 528 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219920841
MGI SNP Detail		 Chr6:89293405 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 326 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs242082444
MGI SNP Detail		 Chr6:89293504 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 227 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265062358
MGI SNP Detail		 Chr6:89293698 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 33 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G
rs230917302
MGI SNP Detail		 Chr6:89293744 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247769929
MGI SNP Detail		 Chr6:89293804 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 56 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259550151
MGI SNP Detail		 Chr6:89293809 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 61 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228379983
MGI SNP Detail		 Chr6:89293858 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 110 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248554088
MGI SNP Detail		 Chr6:89293907 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 159 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211877421
MGI SNP Detail		 Chr6:89293962 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 214 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228609124
MGI SNP Detail		 Chr6:89294066 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 318 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250215067
MGI SNP Detail		 Chr6:89294157 Gm26811 within coordinates of
Plxna1 within coordinates of
Rr141612 within coordinates of
Tssr62004 409 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214527795
MGI SNP Detail		 Chr6:89294306 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 558 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30943642
MGI SNP Detail		 Chr6:89294387 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 639 bp upstream
 SNP A/T A A T A A T A T A A
rs251581572
MGI SNP Detail		 Chr6:89294409 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 661 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T G G T T T T G T T T T T G T T T T T T T T T T T G T T G T T T T
rs215972126
MGI SNP Detail		 Chr6:89294504 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 756 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234457019
MGI SNP Detail		 Chr6:89294553 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 805 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253329902
MGI SNP Detail		 Chr6:89294617 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 869 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220706228
MGI SNP Detail		 Chr6:89294630 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 882 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs237104825
MGI SNP Detail		 Chr6:89294721 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 973 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256912946
MGI SNP Detail		 Chr6:89294754 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 1006 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222999544
MGI SNP Detail		 Chr6:89294930 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 1182 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240465143
MGI SNP Detail		 Chr6:89295542 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 1794 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259929084
MGI SNP Detail		 Chr6:89295554 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 1806 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222326975
MGI SNP Detail		 Chr6:89295693 Gm26811 within coordinates of
Plxna1 within coordinates of
Tssr62004 1945 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 53 of 53
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/17/2024
MGI 6.24 		The Jackson Laboratory
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