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Mouse SNP Summary
Symbol
Name
ID 		Tssr62008
transcription start site region 62008
MGI:5989775

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30415042
MGI SNP Detail		 Chr6:89337595 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1940 bp downstream
 SNP A/G A G
rs258855668
MGI SNP Detail		 Chr6:89337598 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1937 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222622726
MGI SNP Detail		 Chr6:89337603 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1932 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs50699473
MGI SNP Detail		 Chr6:89337671 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1864 bp downstream
 SNP C/T C C T C
rs48173097
MGI SNP Detail		 Chr6:89337675 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1860 bp downstream
 SNP A/G G G A G
rs47846294
MGI SNP Detail		 Chr6:89337715 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1820 bp downstream
 SNP A/G G G A G
rs30373491
MGI SNP Detail		 Chr6:89338110 Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1425 bp downstream
 SNP C/T T C T C T
rs265456142
MGI SNP Detail		 Chr6:89338314 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1221 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227913113
MGI SNP Detail		 Chr6:89338401 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1134 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247478811
MGI SNP Detail		 Chr6:89338533 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 1002 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216949335
MGI SNP Detail		 Chr6:89338536 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 999 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229544241
MGI SNP Detail		 Chr6:89338606 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 929 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253452446
MGI SNP Detail		 Chr6:89338637 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 898 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212897267
MGI SNP Detail		 Chr6:89338864 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 671 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238225968
MGI SNP Detail		 Chr6:89339077 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 458 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G A G G G G
rs257946270
MGI SNP Detail		 Chr6:89339198 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 337 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs216329910
MGI SNP Detail		 Chr6:89339354 Cpgi17713 within coordinates of
Plxna1 within coordinates of
Rr146639 within coordinates of
Tssr62008 181 bp downstream
 SNP C/T T C C C C C C T C C C C T C C T T C T T C T C T C C C C T C T C C T
rs233740621
MGI SNP Detail		 Chr6:89339626 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 70 bp upstream
 SNP C/G G C C C C C C G C C C C G C C G G C G G G C G C C C C G C C C
rs252512950
MGI SNP Detail		 Chr6:89339785 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 229 bp upstream
 SNP G/T G G G T G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G
rs222579164
MGI SNP Detail		 Chr6:89339825 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 269 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235815547
MGI SNP Detail		 Chr6:89339907 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 351 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261563670
MGI SNP Detail		 Chr6:89339921 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 365 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51751784
MGI SNP Detail		 Chr6:89339957 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 401 bp upstream
 SNP C/G C G C G
rs246454412
MGI SNP Detail		 Chr6:89339978 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 422 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50062009
MGI SNP Detail		 Chr6:89339997 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 441 bp upstream
 SNP A/G A G A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227884583
MGI SNP Detail		 Chr6:89340099 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 543 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs241816487
MGI SNP Detail		 Chr6:89340108 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 552 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260844042
MGI SNP Detail		 Chr6:89340150 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 594 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229510461
MGI SNP Detail		 Chr6:89340162 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 606 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30422944
MGI SNP Detail		 Chr6:89340173 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 617 bp upstream
 SNP C/T C T T C T C
rs213659050
MGI SNP Detail		 Chr6:89340253 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 697 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C C G G G G C G G G G G C G G G G G G G G G G G C G G G G G G
rs230502291
MGI SNP Detail		 Chr6:89340260 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 704 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A
rs256322718
MGI SNP Detail		 Chr6:89340267 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 711 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215285322
MGI SNP Detail		 Chr6:89340295 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 739 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T
rs580588138
MGI SNP Detail		 Chr6:89340336 Cpgi17713 within coordinates of
Rr146639 within coordinates of
Tssr62008 780 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47130167
MGI SNP Detail		 Chr6:89340508 Rr146639 within coordinates of
Tssr62008 952 bp upstream
 SNP A/G A G G A
rs30558650
MGI SNP Detail		 Chr6:89340586 Rr146639 within coordinates of
Tssr62008 1030 bp upstream
 SNP A/T A T T T A
rs217227440
MGI SNP Detail		 Chr6:89340597 Rr146639 within coordinates of
Tssr62008 1041 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30907198
MGI SNP Detail		 Chr6:89340645 Tssr62008 1089 bp upstream
 SNP A/T T A A T A T
rs30169939
MGI SNP Detail		 Chr6:89340694 Tssr62008 1138 bp upstream
 SNP A/T T A A T A T
rs29874519
MGI SNP Detail		 Chr6:89340722 Tssr62008 1166 bp upstream
 SNP A/T A T T A T A
rs244122150
MGI SNP Detail		 Chr6:89340751 Tssr62008 1195 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262703815
MGI SNP Detail		 Chr6:89340774 Tssr62008 1218 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs221516747
MGI SNP Detail		 Chr6:89340780 Tssr62008 1224 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs241784446
MGI SNP Detail		 Chr6:89340876 Tssr62008 1320 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261129918
MGI SNP Detail		 Chr6:89340888 Tssr62008 1332 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C C G G G G C G G G G G C G G G G G G G G G G G C G G G G G G G
rs217954666
MGI SNP Detail		 Chr6:89340959 Tssr62008 1403 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30990128
MGI SNP Detail		 Chr6:89341136 Tssr62008 1580 bp upstream
 SNP C/T T C C T C T
rs30365627
MGI SNP Detail		 Chr6:89341161 Tssr62008 1605 bp upstream
 SNP C/T C T T C T C
rs230636510
MGI SNP Detail		 Chr6:89341234 Tssr62008 1678 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T T T T T T C T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251896750
MGI SNP Detail		 Chr6:89341246 Tssr62008 1690 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs30616522
MGI SNP Detail		 Chr6:89341265 Tssr62008 1709 bp upstream
 SNP C/G G C C G C G
rs227680612
MGI SNP Detail		 Chr6:89341278 Tssr62008 1722 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246850625
MGI SNP Detail		 Chr6:89341302 Tssr62008 1746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30945399
MGI SNP Detail		 Chr6:89341436 Rr152199 within coordinates of
Tssr62008 1880 bp upstream
 SNP C/T C C C C T C T T T C T C T T
rs29914034
MGI SNP Detail		 Chr6:89341449 Rr152199 within coordinates of
Tssr62008 1893 bp upstream
 SNP A/C C A A A A C A C C C C A C C C A C C
rs253958451
MGI SNP Detail		 Chr6:89341506 Rr152199 within coordinates of
Tssr62008 1950 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 57 of 57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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