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Mouse SNP Summary
Symbol
Name
ID
Tssr62021
transcription start site region 62021
MGI:5989788

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Showing SNP(s) 1 - 100 of 107

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50276318
MGI SNP Detail
Alliance Variant
Chr6:90403412 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1971 bp downstream
SNP C/T T C C
rs47423224
MGI SNP Detail
Alliance Variant
Chr6:90403430 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1953 bp downstream
SNP A/T A T
rs252707204
MGI SNP Detail
Alliance Variant
Chr6:90403465 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1918 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G A G G G G
rs221729821
MGI SNP Detail
Alliance Variant
Chr6:90403492 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1891 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249836314
MGI SNP Detail
Alliance Variant
Chr6:90403525 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1858 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260743331
MGI SNP Detail
Alliance Variant
Chr6:90403542 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1841 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C T C C C C
rs219647651
MGI SNP Detail
Alliance Variant
Chr6:90403552 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1831 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580035728
MGI SNP Detail
Alliance Variant
Chr6:90403571 Cfap100 Coding-NonSynonymous
Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1812 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241789677
MGI SNP Detail
Alliance Variant
Chr6:90403629 Cfap100 Coding-NonSynonymous
Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Tssr62021 1754 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs254938495
MGI SNP Detail
Alliance Variant
Chr6:90403715 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1668 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225717224
MGI SNP Detail
Alliance Variant
Chr6:90403725 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1658 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583520283
MGI SNP Detail
Alliance Variant
Chr6:90403785 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1598 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238793237
MGI SNP Detail
Alliance Variant
Chr6:90403835 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1548 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257510472
MGI SNP Detail
Alliance Variant
Chr6:90403854 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1529 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232674796
MGI SNP Detail
Alliance Variant
Chr6:90403889 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1494 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs259360621
MGI SNP Detail
Alliance Variant
Chr6:90403958 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1425 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219485282
MGI SNP Detail
Alliance Variant
Chr6:90404071 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1312 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T T T A T A T T T A T T T T T T T T T T T A T A T T A T
rs228211378
MGI SNP Detail
Alliance Variant
Chr6:90404115 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1268 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249988537
MGI SNP Detail
Alliance Variant
Chr6:90404156 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1227 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A G A A A A
rs213591166
MGI SNP Detail
Alliance Variant
Chr6:90404211 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1172 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232770822
MGI SNP Detail
Alliance Variant
Chr6:90404261 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1122 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252836549
MGI SNP Detail
Alliance Variant
Chr6:90404303 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1080 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215781003
MGI SNP Detail
Alliance Variant
Chr6:90404304 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1079 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs239373975
MGI SNP Detail
Alliance Variant
Chr6:90404334 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1049 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264063157
MGI SNP Detail
Alliance Variant
Chr6:90404339 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1044 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220124894
MGI SNP Detail
Alliance Variant
Chr6:90404344 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1039 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244586299
MGI SNP Detail
Alliance Variant
Chr6:90404363 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1020 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A T T A A A A T A T A A A T A A A A A A A A A A A T A A T A A T A
rs30940300
MGI SNP Detail
Alliance Variant
Chr6:90404368 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Tssr62021 1015 bp downstream
SNP A/G G A G G
rs219806442
MGI SNP Detail
Alliance Variant
Chr6:90404412 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Tssr62021 971 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238753831
MGI SNP Detail
Alliance Variant
Chr6:90404515 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Tssr62021 868 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257691113
MGI SNP Detail
Alliance Variant
Chr6:90404523 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Tssr62021 860 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30217646
MGI SNP Detail
Alliance Variant
Chr6:90404524 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Tssr62021 859 bp downstream
SNP A/G A G G A G A
rs247818473
MGI SNP Detail
Alliance Variant
Chr6:90404564 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 819 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs266180174
MGI SNP Detail
Alliance Variant
Chr6:90404604 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 779 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227908403
MGI SNP Detail
Alliance Variant
Chr6:90404608 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 775 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244479643
MGI SNP Detail
Alliance Variant
Chr6:90404611 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 772 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257593350
MGI SNP Detail
Alliance Variant
Chr6:90404650 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 733 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs226676521
MGI SNP Detail
Alliance Variant
Chr6:90404700 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 683 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246401430
MGI SNP Detail
Alliance Variant
Chr6:90404706 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 677 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216653796
MGI SNP Detail
Alliance Variant
Chr6:90404746 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 637 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A G A
rs241898599
MGI SNP Detail
Alliance Variant
Chr6:90404778 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 605 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254606988
MGI SNP Detail
Alliance Variant
Chr6:90404798 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 585 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G A G G G A G G G G G G G G G G G A G G A G G A G
rs212115387
MGI SNP Detail
Alliance Variant
Chr6:90404884 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 499 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235241372
MGI SNP Detail
Alliance Variant
Chr6:90404903 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 480 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249517486
MGI SNP Detail
Alliance Variant
Chr6:90404913 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Tssr62021 470 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219773005
MGI SNP Detail
Alliance Variant
Chr6:90404923 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Tssr62021 460 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs232575261
MGI SNP Detail
Alliance Variant
Chr6:90405013 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 370 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251526760
MGI SNP Detail
Alliance Variant
Chr6:90405118 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 265 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225359073
MGI SNP Detail
Alliance Variant
Chr6:90405143 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 240 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250459657
MGI SNP Detail
Alliance Variant
Chr6:90405144 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 239 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264552018
MGI SNP Detail
Alliance Variant
Chr6:90405194 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 189 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220457784
MGI SNP Detail
Alliance Variant
Chr6:90405276 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 107 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238238115
MGI SNP Detail
Alliance Variant
Chr6:90405317 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 66 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257722282
MGI SNP Detail
Alliance Variant
Chr6:90405335 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 48 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226586420
MGI SNP Detail
Alliance Variant
Chr6:90405341 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 42 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246585212
MGI SNP Detail
Alliance Variant
Chr6:90405350 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Tssr62021 33 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265698340
MGI SNP Detail
Alliance Variant
Chr6:90405398 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233078831
MGI SNP Detail
Alliance Variant
Chr6:90405402 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260192897
MGI SNP Detail
Alliance Variant
Chr6:90405413 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs211929034
MGI SNP Detail
Alliance Variant
Chr6:90405521 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 within coordinates of
Tssr57646 within coordinates of
Tssr62021 84 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs230630787
MGI SNP Detail
Alliance Variant
Chr6:90405526 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 within coordinates of
Tssr57646 within coordinates of
Tssr62021 89 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243576782
MGI SNP Detail
Alliance Variant
Chr6:90405582 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 145 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214187245
MGI SNP Detail
Alliance Variant
Chr6:90405618 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 181 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G
rs46068280
MGI SNP Detail
Alliance Variant
Chr6:90405626 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 189 bp upstream
SNP A/G G A
rs232540997
MGI SNP Detail
Alliance Variant
Chr6:90405653 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 216 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251671827
MGI SNP Detail
Alliance Variant
Chr6:90405681 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 244 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225828143
MGI SNP Detail
Alliance Variant
Chr6:90405698 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634198 within coordinates of
Tssr62021 261 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs239853989
MGI SNP Detail
Alliance Variant
Chr6:90405773 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 336 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49432245
MGI SNP Detail
Alliance Variant
Chr6:90405823 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 386 bp upstream
SNP A/C A A C
rs220774318
MGI SNP Detail
Alliance Variant
Chr6:90405833 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 396 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs50640155
MGI SNP Detail
Alliance Variant
Chr6:90405836 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 399 bp upstream
SNP C/T T C C
rs238347917
MGI SNP Detail
Alliance Variant
Chr6:90405856 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 419 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G A G G G A G G G G G G G G G G G A G G G G A G
rs257686246
MGI SNP Detail
Alliance Variant
Chr6:90405873 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Rr634200 within coordinates of
Tssr62021 436 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220463169
MGI SNP Detail
Alliance Variant
Chr6:90405909 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 472 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240722767
MGI SNP Detail
Alliance Variant
Chr6:90405916 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 479 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263598306
MGI SNP Detail
Alliance Variant
Chr6:90405931 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 494 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224630976
MGI SNP Detail
Alliance Variant
Chr6:90406039 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 602 bp upstream
SNP G/T G T
rs234218271
MGI SNP Detail
Alliance Variant
Chr6:90406101 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 664 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs248297652
MGI SNP Detail
Alliance Variant
Chr6:90406158 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634199 within coordinates of
Tssr62021 721 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264646926
MGI SNP Detail
Alliance Variant
Chr6:90406240 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 803 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224171277
MGI SNP Detail
Alliance Variant
Chr6:90406250 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 813 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T C T T T T T T T T T T T C T T C T T C T
rs243728438
MGI SNP Detail
Alliance Variant
Chr6:90406601 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1164 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A C A
rs214152396
MGI SNP Detail
Alliance Variant
Chr6:90406623 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1186 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226616344
MGI SNP Detail
Alliance Variant
Chr6:90406624 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1187 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257999000
MGI SNP Detail
Alliance Variant
Chr6:90406669 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1232 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217538434
MGI SNP Detail
Alliance Variant
Chr6:90406676 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1239 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242714509
MGI SNP Detail
Alliance Variant
Chr6:90406711 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1274 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261140403
MGI SNP Detail
Alliance Variant
Chr6:90406728 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1291 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs212466326
MGI SNP Detail
Alliance Variant
Chr6:90406828 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1391 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs230948723
MGI SNP Detail
Alliance Variant
Chr6:90406923 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1486 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs251454490
MGI SNP Detail
Alliance Variant
Chr6:90406943 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1506 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220568754
MGI SNP Detail
Alliance Variant
Chr6:90406982 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1545 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs240688169
MGI SNP Detail
Alliance Variant
Chr6:90407009 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1572 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T T G G G G T G T G G G T G G G G G G G G G G G T G T G G T G
rs263481296
MGI SNP Detail
Alliance Variant
Chr6:90407072 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1635 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225787012
MGI SNP Detail
Alliance Variant
Chr6:90407119 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1682 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251440699
MGI SNP Detail
Alliance Variant
Chr6:90407194 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1757 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261464574
MGI SNP Detail
Alliance Variant
Chr6:90407217 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1780 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs224356695
MGI SNP Detail
Alliance Variant
Chr6:90407239 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1802 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs237594024
MGI SNP Detail
Alliance Variant
Chr6:90407247 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1810 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256141840
MGI SNP Detail
Alliance Variant
Chr6:90407257 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Tssr62021 1820 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 100 of 107

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
08/05/2025
MGI 6.24
The Jackson Laboratory

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