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Mouse SNP Summary
Symbol
Name
ID 		Tssr62041
transcription start site region 62041
MGI:5989808

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51660903
MGI SNP Detail		 Chr6:90711765 Iqsec1 within coordinates of
Tssr62041 1995 bp downstream
 SNP C/T T T C T
rs30706518
MGI SNP Detail		 Chr6:90711962 Iqsec1 within coordinates of
Tssr62041 1798 bp downstream
 SNP C/T C T C T C
rs30756849
MGI SNP Detail		 Chr6:90711993 Iqsec1 within coordinates of
Tssr62041 1767 bp downstream
 SNP A/C A C A C A
rs235206036
MGI SNP Detail		 Chr6:90712034 Iqsec1 within coordinates of
Tssr62041 1726 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
rs261835664
MGI SNP Detail		 Chr6:90712068 Iqsec1 within coordinates of
Tssr62041 1692 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C C C C C C
rs222884589
MGI SNP Detail		 Chr6:90712116 Iqsec1 within coordinates of
Tssr62041 1644 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T T T T T T C T T T T T T T
rs239466193
MGI SNP Detail		 Chr6:90712163 Iqsec1 within coordinates of
Tssr62041 1597 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A C C A A A A C A A A A A C A A A A A A A A A A A C A A C A A A A
rs251450025
MGI SNP Detail		 Chr6:90712178 Iqsec1 within coordinates of
Tssr62041 1582 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221639979
MGI SNP Detail		 Chr6:90712356 Iqsec1 within coordinates of
Tssr62041 1404 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240978683
MGI SNP Detail		 Chr6:90712390 Iqsec1 within coordinates of
Tssr62041 1370 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260093603
MGI SNP Detail		 Chr6:90712393 Iqsec1 within coordinates of
Tssr62041 1367 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A T T A A A A T A A A A A T A A A A A A A A A A A T A A T A A A A
rs582098600
MGI SNP Detail		 Chr6:90712432 Iqsec1 within coordinates of
Tssr62041 1328 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218017769
MGI SNP Detail		 Chr6:90712470 Iqsec1 within coordinates of
Tssr62041 1290 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G
rs242224948
MGI SNP Detail		 Chr6:90712575 Iqsec1 within coordinates of
Tssr62041 1185 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265098182
MGI SNP Detail		 Chr6:90712609 Iqsec1 within coordinates of
Tssr62041 1151 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C T T T T T T T T T T T C T T T T T T T T T T T C T T T T T T T
rs230844806
MGI SNP Detail		 Chr6:90712614 Iqsec1 within coordinates of
Tssr62041 1146 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257267470
MGI SNP Detail		 Chr6:90712654 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 1106 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C C C C C C
rs259772602
MGI SNP Detail		 Chr6:90712668 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 1092 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs228503402
MGI SNP Detail		 Chr6:90712785 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 975 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248563480
MGI SNP Detail		 Chr6:90712850 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 910 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C C C C C C
rs211798421
MGI SNP Detail		 Chr6:90712906 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 854 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
rs30271418
MGI SNP Detail		 Chr6:90712982 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 778 bp downstream
 SNP A/G G A A G
rs250344856
MGI SNP Detail		 Chr6:90713090 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 670 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T T T T T T C T C T T T T
rs214772408
MGI SNP Detail		 Chr6:90713095 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62039 within coordinates of
Tssr62041 665 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C
rs585636040
MGI SNP Detail		 Chr6:90713185 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 575 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237387436
MGI SNP Detail		 Chr6:90713489 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 271 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T C T T T T T T T T T T T C T T C T T T T
rs251590994
MGI SNP Detail		 Chr6:90713517 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 243 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C
rs216181468
MGI SNP Detail		 Chr6:90713521 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 239 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs234682805
MGI SNP Detail		 Chr6:90713550 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 210 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T C T T T T T T T T T T T C T T C T T T
rs579589566
MGI SNP Detail		 Chr6:90713752 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62040 within coordinates of
Tssr62041 8 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T T T T T T T C T T T
rs253441290
MGI SNP Detail		 Chr6:90713764 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C T C C C C C C C C C C C T C C C C C
rs220569513
MGI SNP Detail		 Chr6:90713912 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 113 bp upstream
 SNP C/G/T C C C C C C C C C C C C C C C C C C C G C C T C C C C T C C C C C C C C C C C C C C C C C C C C C C C C
rs245250568
MGI SNP Detail		 Chr6:90713919 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 120 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49045991
MGI SNP Detail		 Chr6:90714080 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 281 bp upstream
 SNP C/T C C T C
rs223261478
MGI SNP Detail		 Chr6:90714082 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 283 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240499438
MGI SNP Detail		 Chr6:90714115 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 316 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C T C C C C C C C C C C C T C T C C C C
rs259939350
MGI SNP Detail		 Chr6:90714118 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 319 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228537187
MGI SNP Detail		 Chr6:90714265 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 466 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A A A A A A
rs242604082
MGI SNP Detail		 Chr6:90714268 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 469 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T T T A T T T T T A T T T T T T T T T T T A T T A T T T T
rs255934040
MGI SNP Detail		 Chr6:90714293 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 494 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
rs228401700
MGI SNP Detail		 Chr6:90714320 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 521 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs255000683
MGI SNP Detail		 Chr6:90714335 Cpgi17726 within coordinates of
Iqsec1 within coordinates of
Tssr62041 536 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A T T A A A A T A A A A A T A A A A A A A A A A A T A A A A A A A
rs214363810
MGI SNP Detail		 Chr6:90714629 Iqsec1 within coordinates of
Tssr62041 830 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A G A A A A A A A A A A A G A G A A A A
rs231796063
MGI SNP Detail		 Chr6:90714650 Iqsec1 within coordinates of
Tssr62041 851 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs245595048
MGI SNP Detail		 Chr6:90714974 Iqsec1 within coordinates of
Rr399763 within coordinates of
Tssr62041 1175 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
rs216238907
MGI SNP Detail		 Chr6:90715036 Iqsec1 within coordinates of
Tssr62041 1237 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C C C C C C
rs234749973
MGI SNP Detail		 Chr6:90715043 Iqsec1 within coordinates of
Tssr62041 1244 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253407136
MGI SNP Detail		 Chr6:90715084 Iqsec1 within coordinates of
Tssr62041 1285 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212634921
MGI SNP Detail		 Chr6:90715116 Iqsec1 within coordinates of
Tssr62041 1317 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs235575057
MGI SNP Detail		 Chr6:90715128 Iqsec1 within coordinates of
Tssr62041 1329 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30510176
MGI SNP Detail		 Chr6:90715173 Iqsec1 within coordinates of
Tssr62041 1374 bp upstream
 SNP C/T T T C T C T
rs223491837
MGI SNP Detail		 Chr6:90715195 Iqsec1 within coordinates of
Tssr62041 1396 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T G G T T T T G T T T T T G T T T T T T T T T T T G T T G T T T T
rs240557615
MGI SNP Detail		 Chr6:90715203 Iqsec1 within coordinates of
Tssr62041 1404 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs253682826
MGI SNP Detail		 Chr6:90715263 Iqsec1 within coordinates of
Tssr62041 1464 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs222617594
MGI SNP Detail		 Chr6:90715295 Iqsec1 within coordinates of
Tssr62041 1496 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242750564
MGI SNP Detail		 Chr6:90715336 Iqsec1 within coordinates of
Tssr62041 1537 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261391617
MGI SNP Detail		 Chr6:90715438 Iqsec1 within coordinates of
Tssr62041 1639 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A T T A A A A T A A A A A T A A A A A A A A A A A T A A T A A A A
rs229113830
MGI SNP Detail		 Chr6:90715457 Iqsec1 within coordinates of
Tssr62041 1658 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242854301
MGI SNP Detail		 Chr6:90715546 Iqsec1 within coordinates of
Tssr62041 1747 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C
rs265235269
MGI SNP Detail		 Chr6:90715557 Iqsec1 within coordinates of
Tssr62041 1758 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G T T G G G G T G G G G G T G G G G G G G G G G G T G G T G G G G
rs226635387
MGI SNP Detail		 Chr6:90715583 Iqsec1 within coordinates of
Tssr62041 1784 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245644818
MGI SNP Detail		 Chr6:90715634 Iqsec1 within coordinates of
Tssr62041 1835 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216384753
MGI SNP Detail		 Chr6:90715656 Iqsec1 within coordinates of
Tssr62041 1857 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30311875
MGI SNP Detail		 Chr6:90715796 Iqsec1 within coordinates of
Tssr62041 1997 bp upstream
 SNP C/T T T C T C T
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Showing SNP(s) 1 - 64 of 64
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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