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Mouse SNP Summary
Symbol
Name
ID
Tssr62055
transcription start site region 62055
MGI:5989822

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Showing SNP(s) 1 - 59 of 59

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SNP Density Heatmap
Chr6 from 90,785,144 bp to 90,789,201 bp
(4,058 bp)
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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51048485
MGI SNP Detail
Chr6:90785225 Iqsec1 within coordinates of
Tssr62055 1919 bp downstream
SNP A/G A A A A A A G A A A G A A A A
rs247190537
MGI SNP Detail
Chr6:90785278 Iqsec1 within coordinates of
Tssr62055 1866 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs211864191
MGI SNP Detail
Chr6:90785318 Iqsec1 within coordinates of
Tssr62055 1826 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T
rs49734838
MGI SNP Detail
Chr6:90785397 Iqsec1 within coordinates of
Tssr62055 1747 bp downstream
SNP A/G A A A A A A G A A A G A A A A
rs250418982
MGI SNP Detail
Chr6:90785404 Iqsec1 within coordinates of
Tssr62055 1740 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C A C A
rs214636048
MGI SNP Detail
Chr6:90785419 Iqsec1 within coordinates of
Tssr62055 1725 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46129569
MGI SNP Detail
Chr6:90785488 Iqsec1 within coordinates of
Tssr62055 1656 bp downstream
SNP A/G G G G G G G G G G G A G G G G
rs50963287
MGI SNP Detail
Chr6:90785505 Iqsec1 within coordinates of
Tssr62055 1639 bp downstream
SNP A/G G G G G G G G G G G A G G G G
rs237348185
MGI SNP Detail
Chr6:90785570 Iqsec1 within coordinates of
Tssr62055 1574 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C T C T C
rs263116208
MGI SNP Detail
Chr6:90785615 Iqsec1 within coordinates of
Tssr62055 1529 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46416783
MGI SNP Detail
Chr6:90785694 Iqsec1 within coordinates of
Tssr62055 1450 bp downstream
SNP G/T G G G G G G T G G G T G G G G
rs235847898
MGI SNP Detail
Chr6:90785790 Iqsec1 within coordinates of
Tssr62055 1354 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255414700
MGI SNP Detail
Chr6:90785801 Iqsec1 within coordinates of
Tssr62055 1343 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C G G C C C C G C C C C C G C C C C C C C C C C C G C C C C C C C
rs218342807
MGI SNP Detail
Chr6:90785835 Iqsec1 within coordinates of
Tssr62055 1309 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245108839
MGI SNP Detail
Chr6:90785925 Iqsec1 within coordinates of
Tssr62055 1219 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257200562
MGI SNP Detail
Chr6:90786004 Iqsec1 within coordinates of
Tssr62055 1140 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223223631
MGI SNP Detail
Chr6:90786049 Iqsec1 within coordinates of
Tssr62055 1095 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245148458
MGI SNP Detail
Chr6:90786097 Iqsec1 within coordinates of
Tssr62055 1047 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs46597318
MGI SNP Detail
Chr6:90786267 Iqsec1 within coordinates of
Tssr62055 877 bp downstream
SNP A/G A A A A A A G A A A G A A A A
rs228205937
MGI SNP Detail
Chr6:90786666 Iqsec1 within coordinates of
Tssr62055 478 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C
rs241468241
MGI SNP Detail
Chr6:90786795 Iqsec1 within coordinates of
Tssr62055 349 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253686757
MGI SNP Detail
Chr6:90787103 Cpgi17728 within coordinates of
Iqsec1 within coordinates of
Tssr62054 within coordinates of
Tssr62055 41 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs49225370
MGI SNP Detail
Chr6:90787443 Iqsec1 within coordinates of
Tssr62055 242 bp upstream
SNP C/T C C C C C C T C C C T C C C C
rs254967850
MGI SNP Detail
Chr6:90787445 Iqsec1 within coordinates of
Tssr62055 244 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214347226
MGI SNP Detail
Chr6:90787530 Iqsec1 within coordinates of
Tssr62055 329 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231763472
MGI SNP Detail
Chr6:90787538 Iqsec1 within coordinates of
Tssr62055 337 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G C C G G G G C G G G G G C G G G G G G G G G G G C G G C G G G
rs579405115
MGI SNP Detail
Chr6:90787654 Iqsec1 within coordinates of
Tssr62055 453 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252667752
MGI SNP Detail
Chr6:90787671 Iqsec1 within coordinates of
Tssr62055 470 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582828035
MGI SNP Detail
Chr6:90787684 Iqsec1 within coordinates of
Tssr62055 483 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G A A G G G A G G G G G A G G G G G G G G G G A G G G G G A
rs585092992
MGI SNP Detail
Chr6:90787693 Iqsec1 within coordinates of
Tssr62055 492 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216316718
MGI SNP Detail
Chr6:90787816 Iqsec1 within coordinates of
Tssr62055 615 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A A G A A A G
rs47673265
MGI SNP Detail
Chr6:90787861 Iqsec1 within coordinates of
Tssr62055 660 bp upstream
SNP C/T T T T T T T C T T T C T T T T
rs50506270
MGI SNP Detail
Chr6:90787967 Iqsec1 within coordinates of
Tssr62055 766 bp upstream
SNP A/G G G G G G G A G G G A G G G G
rs47044809
MGI SNP Detail
Chr6:90788021 Iqsec1 within coordinates of
Tssr62055 820 bp upstream
SNP C/G G G G G G G C G G G C G G G G
rs49222108
MGI SNP Detail
Chr6:90788075 Iqsec1 within coordinates of
Tssr62055 874 bp upstream
SNP A/G A A A A A A G A A A G A A A A
rs262113697
MGI SNP Detail
Chr6:90788079 Iqsec1 within coordinates of
Tssr62055 878 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223459574
MGI SNP Detail
Chr6:90788094 Iqsec1 within coordinates of
Tssr62055 893 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G A G G G A
rs247921864
MGI SNP Detail
Chr6:90788103 Iqsec1 within coordinates of
Tssr62055 902 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T T T T T T C T T C T T T C
rs251904471
MGI SNP Detail
Chr6:90788167 Iqsec1 within coordinates of
Tssr62055 966 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs48545930
MGI SNP Detail
Chr6:90788269 Iqsec1 within coordinates of
Tssr62055 1068 bp upstream
SNP C/T T T T T T T C T T T T T T T T
rs241442342
MGI SNP Detail
Chr6:90788314 Iqsec1 within coordinates of
Tssr62055 1113 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T T T A T T T T T A T T T A T T T T T T T A T T A T A T A
rs253751854
MGI SNP Detail
Chr6:90788347 Iqsec1 within coordinates of
Tssr62055 1146 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229094652
MGI SNP Detail
Chr6:90788409 Iqsec1 within coordinates of
Tssr62055 1208 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242820557
MGI SNP Detail
Chr6:90788430 Iqsec1 within coordinates of
Tssr62055 1229 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C T C C C T
rs265231249
MGI SNP Detail
Chr6:90788434 Iqsec1 within coordinates of
Tssr62055 1233 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C G G C C C C G C C C C C G C C C C C C C C C C C G C C G C C C G
rs49518011
MGI SNP Detail
Chr6:90788546 Iqsec1 within coordinates of
Tssr62055 1345 bp upstream
SNP A/G A A A A A A G A A A A A A A A
rs246995176
MGI SNP Detail
Chr6:90788581 Iqsec1 within coordinates of
Tssr62055 1380 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G
rs50898951
MGI SNP Detail
Chr6:90788607 Iqsec1 within coordinates of
Tssr62055 1406 bp upstream
SNP A/G A A A A A A G A A A G A A A A
rs228892645
MGI SNP Detail
Chr6:90788644 Iqsec1 within coordinates of
Tssr62055 1443 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249181378
MGI SNP Detail
Chr6:90788698 Iqsec1 within coordinates of
Tssr62055 1497 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212300737
MGI SNP Detail
Chr6:90788710 Iqsec1 within coordinates of
Tssr62055 1509 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237481868
MGI SNP Detail
Chr6:90788758 Iqsec1 within coordinates of
Tssr62055 1557 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46647674
MGI SNP Detail
Chr6:90788848 Iqsec1 within coordinates of
Tssr62055 1647 bp upstream
SNP A/G G G G G G G G G G G A G G G G
rs50664994
MGI SNP Detail
Chr6:90788976 Iqsec1 within coordinates of
Tssr62055 1775 bp upstream
SNP A/G A A A A A A G A A A G A A A A
rs48669315
MGI SNP Detail
Chr6:90789048 Iqsec1 within coordinates of
Tssr62055 1847 bp upstream
SNP C/T T T T T T T T T T T C T T T T
rs237938657
MGI SNP Detail
Chr6:90789077 Iqsec1 within coordinates of
Tssr62055 1876 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A G A A A A A A A G A A G A G A G
rs252045251
MGI SNP Detail
Chr6:90789085 Iqsec1 within coordinates of
Tssr62055 1884 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46087418
MGI SNP Detail
Chr6:90789094 Iqsec1 within coordinates of
Tssr62055 1893 bp upstream
SNP A/G A A A A A A A A A A G A A A A
rs235130176
MGI SNP Detail
Chr6:90789148 Iqsec1 within coordinates of
Tssr62055 1947 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 59 of 59

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory