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Mouse SNP Summary
Symbol
Name
ID 		Tssr64660
transcription start site region 64660
MGI:5992427

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255343118
MGI SNP Detail		 Chr7:16676649 Tssr64660 1921 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212902665
MGI SNP Detail		 Chr7:16676818 Tssr64660 1752 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs36528158
MGI SNP Detail		 Chr7:16676832 Tssr64660 1738 bp upstream
 SNP A/G A A A A A A G A A A A A A A A
rs261010726
MGI SNP Detail		 Chr7:16676833 Tssr64660 1737 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs48806817
MGI SNP Detail		 Chr7:16676855 Rr642821 within coordinates of
Tssr64660 1715 bp upstream
 SNP C/T C C C T T T T T C T C T T T T T T T T C T C T T T T T T T T C T T T T C T C C C T T C T T T T T T T T T
rs387629421
MGI SNP Detail		 Chr7:16676877 Rr642821 within coordinates of
Tssr64660 1693 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C A C C C C C C C C C C
rs220376675
MGI SNP Detail		 Chr7:16676979 Rr642821 within coordinates of
Tssr64660 1591 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs585650470
MGI SNP Detail		 Chr7:16676999 Rr642821 within coordinates of
Tssr64660 1571 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C
rs578919687
MGI SNP Detail		 Chr7:16677055 Rr642821 within coordinates of
Tssr64660 1515 bp upstream
 SNP C/G C C C G G G G G C G C G G G G G G G G C G C G G G G G G G G C G G G G C G C C C G G C G G G G G G G G G
rs387239896
MGI SNP Detail		 Chr7:16677090 Rr642821 within coordinates of
Tssr64660 1480 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G A G G G G G G G A
rs39085706
MGI SNP Detail		 Chr7:16677270 Rr642821 within coordinates of
Tssr64660 1300 bp upstream
 SNP A/G G G A A A G G A A A A G A G A
rs36356416
MGI SNP Detail		 Chr7:16677296 Tssr64660 1274 bp upstream
 SNP C/G C C G G G C C G G G C C C G
rs36480388
MGI SNP Detail		 Chr7:16677384 Tssr64660 1186 bp upstream
 SNP A/G A G G G A G G G G G G A G
rs243765964
MGI SNP Detail		 Chr7:16677414 Tssr64660 1156 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G A G G G G A G
rs261108788
MGI SNP Detail		 Chr7:16677437 Tssr64660 1133 bp upstream
 SNP A/G G G G A A A A A G A G G A A A A A A A A G A G A A A A A A A A G A A A A G A G G G A A G A A A A G A A A A
rs228400205
MGI SNP Detail		 Chr7:16677525 Tssr64660 1045 bp upstream
 SNP A/C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C A C C C C C C C C A
rs52577459
MGI SNP Detail		 Chr7:16677559 Tssr64660 1011 bp upstream
 SNP A/G G A A
rs45820914
MGI SNP Detail		 Chr7:16677631 Tssr64660 939 bp upstream
 SNP C C C
rs37207041
MGI SNP Detail		 Chr7:16677704 Tssr64660 866 bp upstream
 SNP A/G A G G
rs52235644
MGI SNP Detail		 Chr7:16677713 Tssr64660 857 bp upstream
 SNP C/T T C C
rs52141120
MGI SNP Detail		 Chr7:16677714 Tssr64660 856 bp upstream
 SNP G/T T G G
rs52486153
MGI SNP Detail		 Chr7:16677733 Tssr64660 837 bp upstream
 SNP A/G G A A
rs45776145
MGI SNP Detail		 Chr7:16677747 Tssr64660 823 bp upstream
 SNP G G G
rs52529056
MGI SNP Detail		 Chr7:16677781 Tssr64660 789 bp upstream
 SNP A/G G A A
rs38905282
MGI SNP Detail		 Chr7:16677860 Tssr64660 710 bp upstream
 SNP A/G A A G G G A G G G G G G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs37309747
MGI SNP Detail		 Chr7:16677901 Tssr64660 669 bp upstream
 SNP A/T A A A A A A T A A A A A A A
rs48199176
MGI SNP Detail		 Chr7:16677935 Tssr64660 635 bp upstream
 SNP G/T T G G
rs238610645
MGI SNP Detail		 Chr7:16677971 Tssr64660 599 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48848303
MGI SNP Detail		 Chr7:16677972 Tssr64660 598 bp upstream
 SNP G/T T G G
rs220514326
MGI SNP Detail		 Chr7:16677976 Tssr64660 594 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48109647
MGI SNP Detail		 Chr7:16678071 Tssr64660 499 bp upstream
 SNP A/G A G G
rs254884564
MGI SNP Detail		 Chr7:16678084 Tssr64660 486 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50895536
MGI SNP Detail		 Chr7:16678122 Rr642822 within coordinates of
Tssr64660 448 bp upstream
 SNP A/G G A A
rs46703578
MGI SNP Detail		 Chr7:16678161 Rr642822 within coordinates of
Tssr64660 409 bp upstream
 SNP T T T T T
rs46033479
MGI SNP Detail		 Chr7:16678192 Rr642822 within coordinates of
Tssr64660 378 bp upstream
 SNP A/G G A A
rs223230869
MGI SNP Detail		 Chr7:16678218 Rr642822 within coordinates of
Tssr64660 352 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245971293
MGI SNP Detail		 Chr7:16678221 Rr642822 within coordinates of
Tssr64660 349 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A A A A A A A A A A A A A A
rs45753383
MGI SNP Detail		 Chr7:16678226 Rr642822 within coordinates of
Tssr64660 344 bp upstream
 SNP G/T T G
rs51223495
MGI SNP Detail		 Chr7:16678237 Rr642822 within coordinates of
Tssr64660 333 bp upstream
 SNP A/G A G G
rs50892528
MGI SNP Detail		 Chr7:16678289 Rr642822 within coordinates of
Tssr64660 281 bp upstream
 SNP C/T C T T
rs37236730
MGI SNP Detail		 Chr7:16678344 Rr642822 within coordinates of
Tssr64660 226 bp upstream
 SNP C/G C C G G G C C G G G G G G C G
rs38507754
MGI SNP Detail		 Chr7:16678369 Rr642822 within coordinates of
Tssr64660 201 bp upstream
 SNP C/T C C T T T C C T T T T T C C T
rs36334228
MGI SNP Detail		 Chr7:16678379 Cpgi18406 within coordinates of
Rr642822 within coordinates of
Tssr64660 191 bp upstream
 SNP C/T C C C C C C C C C C T C T
rs387304229
MGI SNP Detail		 Chr7:16678420 Cpgi18406 within coordinates of
Rr368243 within coordinates of
Rr642822 within coordinates of
Tssr64660 150 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G A
rs245409143
MGI SNP Detail		 Chr7:16678482 Cpgi18406 within coordinates of
Rr368243 within coordinates of
Rr642822 within coordinates of
Tssr64660 88 bp upstream
 SNP A/C A A A C C C C C A C A A C C C C C C C A A C A C C C C A C C C A C A C C A C A A A C C A C C C C A C C C C
rs215525355
MGI SNP Detail		 Chr7:16678515 Cpgi18406 within coordinates of
Rr368243 within coordinates of
Rr642822 within coordinates of
Tssr64660 55 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A A T A A A A A A A A A A A A A A A A A A A
rs31112478
MGI SNP Detail		 Chr7:16678556 Cpgi18406 within coordinates of
Rr368243 within coordinates of
Rr642822 within coordinates of
Tssr64660 14 bp upstream
 SNP C/T C T C C C
rs37722585
MGI SNP Detail		 Chr7:16678600 Cpgi18406 within coordinates of
Rr642822 within coordinates of
Tssr64660 within coordinates of
 SNP C/T C C C C C C T C C C C C C
rs38130183
MGI SNP Detail		 Chr7:16678614 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Rr642822 within coordinates of
Tssr64660 within coordinates of
 SNP A/T T T T T T T T T A T T A T T T
rs36392500
MGI SNP Detail		 Chr7:16678650 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 5 bp downstream
 SNP A/G G G G G G G A G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236721197
MGI SNP Detail		 Chr7:16678675 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 30 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254978767
MGI SNP Detail		 Chr7:16678720 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 75 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222330402
MGI SNP Detail		 Chr7:16678854 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 209 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31433865
MGI SNP Detail		 Chr7:16678858 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 213 bp downstream
 SNP A/T T A A A
rs252577514
MGI SNP Detail		 Chr7:16678879 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 234 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C C C C C T C C C C C C C T C C C T C C C C T T
rs222833523
MGI SNP Detail		 Chr7:16678895 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 250 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243010789
MGI SNP Detail		 Chr7:16678995 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 350 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A C A A A A A A A C A A A A
rs264818767
MGI SNP Detail		 Chr7:16679016 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 371 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs37661599
MGI SNP Detail		 Chr7:16679086 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 441 bp downstream
 SNP C/T C C C C C C C C C T C C C T
rs36523622
MGI SNP Detail		 Chr7:16679089 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 444 bp downstream
 SNP A/G G G G G G G G G G G G A G
rs259137861
MGI SNP Detail		 Chr7:16679186 Cpgi18406 within coordinates of
Pnma8b within coordinates of
Tssr64660 541 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227617804
MGI SNP Detail		 Chr7:16679230 Cpgi18406 within coordinates of
Gm71929 within coordinates of
Pnma8b within coordinates of
Tssr64660 585 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32259412
MGI SNP Detail		 Chr7:16679281 Cpgi18406 within coordinates of
Gm71929 within coordinates of
Pnma8b within coordinates of
Tssr64660 636 bp downstream
 SNP C/T C C T C C C
rs262868432
MGI SNP Detail		 Chr7:16679336 Cpgi18406 within coordinates of
Gm71929 within coordinates of
Pnma8b within coordinates of
Tssr64660 691 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs387862782
MGI SNP Detail		 Chr7:16679854 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1209 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C T
rs38324879
MGI SNP Detail		 Chr7:16679869 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1224 bp downstream
 SNP C/T C T T T C C T C T C C C
rs579814842
MGI SNP Detail		 Chr7:16679941 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1296 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs265648386
MGI SNP Detail		 Chr7:16679944 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1299 bp downstream
 SNP A/C/T A A A T T T T T A T A A T T T T T T T A A A C T T A T A T T T A T A T T A T A A C T A A T T T T A T T T A
rs586606130
MGI SNP Detail		 Chr7:16679953 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1308 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583499074
MGI SNP Detail		 Chr7:16679962 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1317 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs587444487
MGI SNP Detail		 Chr7:16679995 Pnma8b within coordinates of
Rr642824 within coordinates of
Tssr64660 1350 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32131434
MGI SNP Detail		 Chr7:16680289 Cpgi18407 within coordinates of
Pnma8b within coordinates of
Tssr64660 1644 bp downstream
 SNP A/G G A A A
rs31916959
MGI SNP Detail		 Chr7:16680368 Cpgi18407 within coordinates of
Pnma8b within coordinates of
Tssr64660 1723 bp downstream
 SNP C/T T T C C C T T C T C C C C C C C
rs50983041
MGI SNP Detail		 Chr7:16680469 Cpgi18407 within coordinates of
Pnma8b within coordinates of
Tssr64660 1824 bp downstream
 SNP G G G G G G
rs248362415
MGI SNP Detail		 Chr7:16680511 Cpgi18407 within coordinates of
Pnma8b within coordinates of
Tssr64660 1866 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31592693
MGI SNP Detail		 Chr7:16680631 Cpgi18407 within coordinates of
Pnma8b within coordinates of
Tssr64660 1986 bp downstream
 SNP C/T T T C C C T T T C C C T C T C C
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Showing SNP(s) 1 - 76 of 76
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory