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Mouse SNP Summary
Symbol
Name
ID
Tssr66001
transcription start site region 66001
MGI:5993768

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Showing SNP(s) 1 - 83 of 83

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216779591
MGI SNP Detail
Chr7:43085041 Gm52993 within coordinates of
Lim2 within coordinates of
Tssr66001 1969 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240112738
MGI SNP Detail
Chr7:43085158 Gm52993 within coordinates of
Lim2 within coordinates of
Tssr66001 1852 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs258605353
MGI SNP Detail
Chr7:43085202 Gm52993 within coordinates of
Lim2 within coordinates of
Tssr66001 1808 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219086925
MGI SNP Detail
Chr7:43085352 Gm52993 within coordinates of
Lim2 within coordinates of
Tssr66001 1658 bp upstream
SNP A/C/T C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31615050
MGI SNP Detail
Chr7:43085449 Tssr66001 1561 bp upstream
SNP A/G A G A A A A A A G A A G A G G A
rs250313495
MGI SNP Detail
Chr7:43085452 Tssr66001 1558 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217908576
MGI SNP Detail
Chr7:43085454 Tssr66001 1556 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31050536
MGI SNP Detail
Chr7:43085477 Tssr66001 1533 bp upstream
SNP A/G G A A G
rs261907389
MGI SNP Detail
Chr7:43085480 Tssr66001 1530 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224642591
MGI SNP Detail
Chr7:43085492 Tssr66001 1518 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247439689
MGI SNP Detail
Chr7:43085568 Tssr66001 1442 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264589982
MGI SNP Detail
Chr7:43085597 Tssr66001 1413 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228855231
MGI SNP Detail
Chr7:43085604 Tssr66001 1406 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs232215923
MGI SNP Detail
Chr7:43085643 Tssr66001 1367 bp upstream
SNP C/T C T
rs582582347
MGI SNP Detail
Chr7:43085661 Tssr66001 1349 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236934677
MGI SNP Detail
Chr7:43085675 Tssr66001 1335 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254155082
MGI SNP Detail
Chr7:43085683 Tssr66001 1327 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226401926
MGI SNP Detail
Chr7:43085771 Tssr66001 1239 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243987618
MGI SNP Detail
Chr7:43085844 Tssr66001 1166 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31292666
MGI SNP Detail
Chr7:43085851 Tssr66001 1159 bp upstream
SNP C/T C T C C C C C C T C C T C T T C
rs31711382
MGI SNP Detail
Chr7:43085890 Tssr66001 1120 bp upstream
SNP A/G G A G G G G G G A G G G A G A A A G
rs260314872
MGI SNP Detail
Chr7:43086044 Tssr66001 966 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219094495
MGI SNP Detail
Chr7:43086101 Tssr66001 909 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31162525
MGI SNP Detail
Chr7:43086120 Tssr66001 890 bp upstream
SNP C/T C T C C C C C C T C C T C T C
rs250456965
MGI SNP Detail
Chr7:43086121 Tssr66001 889 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211925749
MGI SNP Detail
Chr7:43086247 Tssr66001 763 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232680479
MGI SNP Detail
Chr7:43086251 Tssr66001 759 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs256843195
MGI SNP Detail
Chr7:43086277 Tssr66001 733 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224933874
MGI SNP Detail
Chr7:43086323 Tssr66001 687 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214342066
MGI SNP Detail
Chr7:43086335 Tssr66001 675 bp upstream
SNP C/T C T
rs264039794
MGI SNP Detail
Chr7:43086337 Tssr66001 673 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32177728
MGI SNP Detail
Chr7:43086437 Tssr2210 within coordinates of
Tssr66001 573 bp upstream
SNP C/T C T C C C C C C T C C T C T T C
rs237073649
MGI SNP Detail
Chr7:43086443 Tssr2210 within coordinates of
Tssr66001 567 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254274944
MGI SNP Detail
Chr7:43086454 Tssr66001 556 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs220265313
MGI SNP Detail
Chr7:43086504 Tssr66001 506 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs31592018
MGI SNP Detail
Chr7:43086553 Tssr66001 457 bp upstream
SNP A/T T T T A
rs31946770
MGI SNP Detail
Chr7:43086567 Nkg7 within coordinates of
Tssr66000 within coordinates of
Tssr66001 443 bp upstream
SNP C/T T T T T T T T C T T T C T C C C T
rs232357127
MGI SNP Detail
Chr7:43086572 Nkg7 within coordinates of
Tssr66000 within coordinates of
Tssr66001 438 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs254736048
MGI SNP Detail
Chr7:43086636 Nkg7 within coordinates of
Tssr66001 374 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C T C C C C C C
rs32058946
MGI SNP Detail
Chr7:43086677 Nkg7 within coordinates of
Tssr66001 333 bp upstream
SNP A/G G A G G G G G G G A G G A G A A G
rs225080552
MGI SNP Detail
Chr7:43086688 Nkg7 within coordinates of
Tssr66001 322 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244240070
MGI SNP Detail
Chr7:43086891 Nkg7 within coordinates of
Tssr66001 119 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6390176
MGI SNP Detail
Chr7:43087019 Nkg7 within coordinates of
Tssr66001 within coordinates of
SNP C/T T C T T T T T T C C T T C T C C T
rs37379517
MGI SNP Detail
Chr7:43087032 Nkg7 within coordinates of
Tssr66001 12 bp downstream
Tssr66002 within coordinates of
SNP A/G G G G G G G A G G A G A A G
rs255103675
MGI SNP Detail
Chr7:43087129 Nkg7 within coordinates of
Tssr66001 109 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37464988
MGI SNP Detail
Chr7:43087142 Nkg7 within coordinates of
Tssr66001 122 bp downstream
SNP A/G A G ? A A A A G A A A G A G G G A
rs37236269
MGI SNP Detail
Chr7:43087179 Nkg7 within coordinates of
Tssr66001 159 bp downstream
SNP G/T T T T T T T T G T T T T G T T
rs260749274
MGI SNP Detail
Chr7:43087193 Nkg7 within coordinates of
Tssr66001 173 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs45755614
MGI SNP Detail
Chr7:43087370 Nkg7 within coordinates of
Tssr66001 350 bp downstream
SNP C C C
rs230456804
MGI SNP Detail
Chr7:43087377 Nkg7 within coordinates of
Tssr66001 357 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47204710
MGI SNP Detail
Chr7:43087382 Nkg7 within coordinates of
Tssr66001 362 bp downstream
SNP C/T C T
rs49668341
MGI SNP Detail
Chr7:43087434 Nkg7 within coordinates of
Tssr66001 414 bp downstream
SNP C/T T C
rs243422183
MGI SNP Detail
Chr7:43087516 Nkg7 within coordinates of
Tssr66001 496 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs31186213
MGI SNP Detail
Chr7:43087609 Nkg7 within coordinates of
Tssr66001 589 bp downstream
SNP C/T T C T
rs212887509
MGI SNP Detail
Chr7:43087818 Tssr66001 798 bp downstream
SNP A/G G A
rs224507659
MGI SNP Detail
Chr7:43087839 Tssr66001 819 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs32354664
MGI SNP Detail
Chr7:43087890 Tssr66001 870 bp downstream
SNP C/T T C C T
rs260800696
MGI SNP Detail
Chr7:43088027 Tssr66001 1007 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225025843
MGI SNP Detail
Chr7:43088030 Tssr66001 1010 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579482353
MGI SNP Detail
Chr7:43088067 Tssr66001 1047 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583508636
MGI SNP Detail
Chr7:43088068 Tssr66001 1048 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs36249959
MGI SNP Detail
Chr7:43088073 Tssr66001 1053 bp downstream
SNP A/G G A G G G G G G G A G A A G
rs255968754
MGI SNP Detail
Chr7:43088111 Tssr66001 1091 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585649234
MGI SNP Detail
Chr7:43088130 Tssr66001 1110 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231150855
MGI SNP Detail
Chr7:43088138 Tssr66001 1118 bp downstream
SNP C/T T C C C C C C C C C C C C C C C C C C C C C C T T C T T C C C C C T C C C C T C T C C C C C C C C C C C C
rs250537396
MGI SNP Detail
Chr7:43088141 Tssr66001 1121 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs32455795
MGI SNP Detail
Chr7:43088146 Tssr66001 1126 bp downstream
SNP C/T C T C
rs36471539
MGI SNP Detail
Chr7:43088170 Tssr66001 1150 bp downstream
SNP C/T C T C C C C C T C C T C T T C
rs237793932
MGI SNP Detail
Chr7:43088215 Tssr66001 1195 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581697542
MGI SNP Detail
Chr7:43088270 Tssr66001 1250 bp downstream
SNP G/T T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs259878314
MGI SNP Detail
Chr7:43088379 Tssr66001 1359 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216490122
MGI SNP Detail
Chr7:43088613 Tssr66001 1593 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230400135
MGI SNP Detail
Chr7:43088674 Tssr66001 1654 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T T T T C T T T T T T
rs247888667
MGI SNP Detail
Chr7:43088712 Tssr66001 1692 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220322468
MGI SNP Detail
Chr7:43088749 Tssr66001 1729 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238564226
MGI SNP Detail
Chr7:43088795 Tssr66001 1775 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A
rs259877602
MGI SNP Detail
Chr7:43088812 Tssr66001 1792 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31285713
MGI SNP Detail
Chr7:43088813 Tssr66001 1793 bp downstream
SNP A/G G A G G G G G G A G G A G A A G
rs248672307
MGI SNP Detail
Chr7:43088867 Tssr66001 1847 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242242113
MGI SNP Detail
Chr7:43088875 Tssr66001 1855 bp downstream
SNP C/T C T
rs32385255
MGI SNP Detail
Chr7:43088878 Tssr66001 1858 bp downstream
SNP C/T T C T T T T T T C T T C T C C T
rs237228015
MGI SNP Detail
Chr7:43088956 Tssr66001 1936 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258410073
MGI SNP Detail
Chr7:43088986 Tssr66001 1966 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 83 of 83

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory