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Mouse SNP Summary
Symbol
Name
ID
Tssr72472
transcription start site region 72472
MGI:6000239

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Showing SNP(s) 1 - 55 of 55

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260851720
MGI SNP Detail
Chr7:45432475 Tssr72472 1975 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49535328
MGI SNP Detail
Chr7:45432487 Tssr72472 1963 bp downstream
SNP C/T T T T C
rs50679157
MGI SNP Detail
Alliance Variant
Chr7:45432594 Lmtk3 mRNA-UTR
Tssr72472 1856 bp downstream
SNP G/T T G G T T T T T T T G G T T T T T T T T T T G G G T T G G T T T T G T T T T T T G T T T T T T T T T T T T
rs260747193
MGI SNP Detail
Alliance Variant
Chr7:45432601 Lmtk3 mRNA-UTR
Tssr72472 1849 bp downstream
SNP A/G G A A A A A A A A A A A A A A A A A A G A A A A A A G A A G A A A A A A A A G A A A A A A A G A A A A A A
rs220206508
MGI SNP Detail
Alliance Variant
Chr7:45432660 Lmtk3 mRNA-UTR
Tssr72472 1790 bp downstream
SNP A/G A A G G G G G G G A A G G G G G G G A G G A A A G A A A G G G G A G G G G A G A G G G G G A G A G G G G
rs32460016
MGI SNP Detail
Alliance Variant
Chr7:45432666 Lmtk3 mRNA-UTR
Tssr72472 1784 bp downstream
SNP A/G A G A
rs257745063
MGI SNP Detail
Alliance Variant
Chr7:45432705 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1745 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221925341
MGI SNP Detail
Alliance Variant
Chr7:45432763 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1687 bp downstream
SNP C/T C T T C C C C C C C T C C C C C C C C C C C T T C C T T C C C C C C C C C C C C C C C C C C C C C C C C
rs247866111
MGI SNP Detail
Alliance Variant
Chr7:45432788 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1662 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264471253
MGI SNP Detail
Alliance Variant
Chr7:45432792 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1658 bp downstream
SNP A/T A T T T T T T T T T T T T T T T T T A T T T T T T A T T T T T T T T T T T A T T T T T T A T T T T T T
rs234437413
MGI SNP Detail
Alliance Variant
Chr7:45432849 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1601 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs32379431
MGI SNP Detail
Alliance Variant
Chr7:45432852 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1598 bp downstream
SNP C/G G C
rs264723800
MGI SNP Detail
Alliance Variant
Chr7:45432886 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1564 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226397512
MGI SNP Detail
Alliance Variant
Chr7:45432902 Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1548 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31386451
MGI SNP Detail
Alliance Variant
Chr7:45432940 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1510 bp downstream
SNP A/T T A
rs215741876
MGI SNP Detail
Alliance Variant
Chr7:45432952 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1498 bp downstream
SNP C/T T T T C C C C C C C T T C C C C C C C T C C T T T C T T T C C C C T C C C C T C T C C C C C T C C C C C C
rs232667461
MGI SNP Detail
Alliance Variant
Chr7:45432956 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1494 bp downstream
SNP A/G A A A G G G G G G G A A G G G G G G G A G G A A A G A A A G G G G A G G G G A G A G G G G G A G G G G G G
rs259725251
MGI SNP Detail
Alliance Variant
Chr7:45432971 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1479 bp downstream
SNP C/T T C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C T C C C C C C C T C C C C C C
rs217544540
MGI SNP Detail
Alliance Variant
Chr7:45432989 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1461 bp downstream
SNP A/T A T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T A T T T T T T T A T T T T T T
rs237236649
MGI SNP Detail
Alliance Variant
Chr7:45432998 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1452 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255506150
MGI SNP Detail
Alliance Variant
Chr7:45433040 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1410 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47132892
MGI SNP Detail
Alliance Variant
Chr7:45433132 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr66636 within coordinates of
Tssr72472 1318 bp downstream
SNP C/T T C
rs31764796
MGI SNP Detail
Alliance Variant
Chr7:45433195 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1255 bp downstream
SNP A/C C C A C C C C C C C C C C A
rs31110503
MGI SNP Detail
Alliance Variant
Chr7:45433240 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1210 bp downstream
SNP C/T C T C
rs222017376
MGI SNP Detail
Alliance Variant
Chr7:45433253 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1197 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245511022
MGI SNP Detail
Alliance Variant
Chr7:45433282 Cpgi19088 within coordinates of
Lmtk3 mRNA-UTR
Rr646575 within coordinates of
Tssr72472 1168 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264233906
MGI SNP Detail
Alliance Variant
Chr7:45433542 Cpgi19088 within coordinates of
Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646576 within coordinates of
Tssr72472 908 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225883118
MGI SNP Detail
Alliance Variant
Chr7:45433641 Lmtk3 Coding-Synonymous
Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646576 within coordinates of
Tssr72472 809 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs31427695
MGI SNP Detail
Alliance Variant
Chr7:45433818 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646576 within coordinates of
Tssr72472 632 bp downstream
SNP A/G A G G G G A G A G A G
rs254270525
MGI SNP Detail
Alliance Variant
Chr7:45433832 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646576 within coordinates of
Tssr72472 618 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31976191
MGI SNP Detail
Alliance Variant
Chr7:45434084 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 366 bp downstream
SNP C/T T C C C T
rs31137825
MGI SNP Detail
Alliance Variant
Chr7:45434094 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 356 bp downstream
SNP G/T T G G G T
rs258402431
MGI SNP Detail
Alliance Variant
Chr7:45434180 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 270 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226592914
MGI SNP Detail
Alliance Variant
Chr7:45434281 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 169 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs31390857
MGI SNP Detail
Alliance Variant
Chr7:45434373 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 77 bp downstream
SNP G/T G G T G
rs31823179
MGI SNP Detail
Alliance Variant
Chr7:45434486 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 31 bp upstream
SNP A/G A G A A A A
rs228345439
MGI SNP Detail
Alliance Variant
Chr7:45434538 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 83 bp upstream
SNP G/T G T T G G G G G G G T T G G G G G G G G G G G T T G G T T G G G G G G G G G G G G G G G G G G G G G G G G
rs252507433
MGI SNP Detail
Alliance Variant
Chr7:45434746 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 291 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214343007
MGI SNP Detail
Alliance Variant
Chr7:45434748 Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Rr646577 within coordinates of
Tssr72472 293 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231720455
MGI SNP Detail
Alliance Variant
Chr7:45434866 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 411 bp upstream
SNP A/T T A A A A A A A T A A A A A A A A A A T T A A T T A A A T A A A A A A T A A A A A A A T A A A A
rs253450481
MGI SNP Detail
Alliance Variant
Chr7:45434927 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 472 bp upstream
SNP A/C/G G A A A A A A A G G A A A A A A A A A A G G G A A G G A A A G A A A A A A G A A A A A A A C A A A A
rs240171558
MGI SNP Detail
Alliance Variant
Chr7:45435112 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Lmtk3 Splice-Site
Tssr72472 657 bp upstream
SNP A/C C A A A A A A A C C A A A A A A A A A A C C C A A C C A A A A A A A A A A A C A A A A A A A A A A A A
rs261056559
MGI SNP Detail
Alliance Variant
Chr7:45435147 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 692 bp upstream
SNP C/T C C C T C C T T C C C C C C C C C T C C T C C C C C C C C T C C C T T T C C C T C C T T C C C T C T T
rs226249209
MGI SNP Detail
Alliance Variant
Chr7:45435337 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 882 bp upstream
SNP C/G C G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G C G G G G G G G C G G G G G G
rs242311244
MGI SNP Detail
Alliance Variant
Chr7:45435361 Cpgi19089 within coordinates of
Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 906 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs248243403
MGI SNP Detail
Alliance Variant
Chr7:45435396 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 941 bp upstream
SNP C/T T C C T T T T T T T C T T T T T T T T T T C C C T T C C T T T C T T T T T T C T T T T T T T C T T T T
rs220327342
MGI SNP Detail
Alliance Variant
Chr7:45435475 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1020 bp upstream
SNP A/G G G G A G G A A G G G G G G G G G G A G G A G G G G G G G G G A G G G A A A G G G A G G A A G G G A G A A
rs237970073
MGI SNP Detail
Alliance Variant
Chr7:45435510 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1055 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258385965
MGI SNP Detail
Alliance Variant
Chr7:45435523 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1068 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231949153
MGI SNP Detail
Alliance Variant
Chr7:45435658 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1203 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250895256
MGI SNP Detail
Alliance Variant
Chr7:45435702 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1247 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263925178
MGI SNP Detail
Alliance Variant
Chr7:45435755 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1300 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228982986
MGI SNP Detail
Alliance Variant
Chr7:45436123 Cpgi19090 within coordinates of
Lmtk3 Intron
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1668 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46045282
MGI SNP Detail
Alliance Variant
Chr7:45436335 Lmtk3 Coding-Synonymous
Lmtk3 mRNA-UTR
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1880 bp upstream
SNP G/T G T
rs214092940
MGI SNP Detail
Alliance Variant
Chr7:45436437 Lmtk3 Intron
Lmtk3 Noncoding-Transcript-Variant
Tssr72472 1982 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 55 of 55

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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