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Mouse SNP Summary
Symbol
Name
ID 		Tssr72499
transcription start site region 72499
MGI:6000266

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253646229
MGI SNP Detail
Alliance Variant		 Chr7:45568706 Emp3 Intron
Tssr72499 1979 bp downstream
 SNP C/T T C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C C C T C C C C C C C T C C C C C
rs50430297
MGI SNP Detail
Alliance Variant		 Chr7:45568710 Emp3 Intron
Tssr72499 1975 bp downstream
 SNP C/T T C C C C C T C T C C T C
rs243848943
MGI SNP Detail
Alliance Variant		 Chr7:45568770 Emp3 Coding-Synonymous
Tssr72489 within coordinates of
Tssr72499 1915 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216651355
MGI SNP Detail
Alliance Variant		 Chr7:45568803 Emp3 Coding-Synonymous
Tssr72499 1882 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs13466560
MGI SNP Detail
Alliance Variant		 Chr7:45568860 Emp3 Coding-Synonymous
Emp3 mRNA-UTR
Tssr72499 1825 bp downstream
 SNP C/G G C C C C G G G C G G C G G C
rs254605011
MGI SNP Detail
Alliance Variant		 Chr7:45568918 Emp3 Intron
Tssr72499 1767 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49625429
MGI SNP Detail
Alliance Variant		 Chr7:45569005 Emp3 Intron
Tssr72499 1680 bp downstream
 SNP C/T T T T T T T T T T T T T T T C
rs235734904
MGI SNP Detail
Alliance Variant		 Chr7:45569012 Emp3 Intron
Tssr72499 1673 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250510769
MGI SNP Detail
Alliance Variant		 Chr7:45569069 Emp3 Intron
Tssr72499 1616 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579287535
MGI SNP Detail
Alliance Variant		 Chr7:45569142 Emp3 Intron
Tssr72499 1543 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49413196
MGI SNP Detail
Alliance Variant		 Chr7:45569188 Emp3 Intron
Tssr72499 1497 bp downstream
 SNP A/G G A G A G G G G G G G G G G G
rs51655208
MGI SNP Detail
Alliance Variant		 Chr7:45569335 Emp3 Intron
Tssr72499 1350 bp downstream
 SNP T T
rs262189453
MGI SNP Detail
Alliance Variant		 Chr7:45569476 Emp3 Intron
Tssr72499 1209 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G C G G G G G G G G G G G G C G G G G G C C
rs51496094
MGI SNP Detail
Alliance Variant		 Chr7:45569487 Emp3 Intron
Tssr72499 1198 bp downstream
 SNP A/G G A A G G G G G G G A A G G G G G G G G G G A A A G G A A G G G G A G G G G G G A G G G G G G G G G G G
rs248231419
MGI SNP Detail
Alliance Variant		 Chr7:45569549 Emp3 Intron
Tssr72499 1136 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs31466466
MGI SNP Detail
Alliance Variant		 Chr7:45569656 Emp3 Intron
Tssr72499 1029 bp downstream
 SNP G/T T G
rs221805536
MGI SNP Detail
Alliance Variant		 Chr7:45569828 Emp3 Intron
Emp3 mRNA-UTR
Emp3 Splice-Site
Tssr72491 within coordinates of
Tssr72499 857 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236502586
MGI SNP Detail
Alliance Variant		 Chr7:45569840 Emp3 Intron
Tssr72491 within coordinates of
Tssr72499 845 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47459927
MGI SNP Detail
Alliance Variant		 Chr7:45569916 Emp3 Intron
Tssr72499 769 bp downstream
 SNP A/G G A A A A A G A G A A G A
rs225756355
MGI SNP Detail
Alliance Variant		 Chr7:45569986 Emp3 Intron
Tssr72499 699 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250377505
MGI SNP Detail
Alliance Variant		 Chr7:45570013 Emp3 Intron
Tssr72499 672 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs48278636
MGI SNP Detail
Alliance Variant		 Chr7:45570049 Emp3 Intron
Tssr72499 636 bp downstream
 SNP A/G A G G G G A A G A G G G G G
rs231646527
MGI SNP Detail
Alliance Variant		 Chr7:45570059 Emp3 Intron
Emp3 Splice-Site
Tssr72492 within coordinates of
Tssr72499 626 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260009156
MGI SNP Detail
Alliance Variant		 Chr7:45570066 Emp3 Intron
Emp3 mRNA-UTR
Tssr72499 619 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49854877
MGI SNP Detail
Alliance Variant		 Chr7:45570080 Emp3 Intron
Emp3 mRNA-UTR
Tssr72493 within coordinates of
Tssr72499 605 bp downstream
 SNP A/G A A A A A G A A A A G A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46103198
MGI SNP Detail
Alliance Variant		 Chr7:45570081 Emp3 Intron
Emp3 mRNA-UTR
Tssr72493 within coordinates of
Tssr72499 604 bp downstream
 SNP A/C A C C C C A C C C C C C C
rs235690466
MGI SNP Detail
Alliance Variant		 Chr7:45570085 Emp3 Intron
Emp3 mRNA-UTR
Tssr72493 within coordinates of
Tssr72499 600 bp downstream
 SNP C/T C T T C C C C C C C T T C C C C C C C T C C C T T C C T T C C C C C C C C C C C C C C C C C C C C C C C C
rs50192445
MGI SNP Detail
Alliance Variant		 Chr7:45570095 Emp3 Intron
Emp3 mRNA-UTR
Tssr72499 590 bp downstream
 SNP C/G G G G G G G G G G C G G C G
rs212252761
MGI SNP Detail
Alliance Variant		 Chr7:45570134 Emp3 Intron
Emp3 mRNA-UTR
Tssr72496 within coordinates of
Tssr72499 551 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs232887930
MGI SNP Detail
Alliance Variant		 Chr7:45570141 Emp3 Intron
Emp3 mRNA-UTR
Tssr72496 within coordinates of
Tssr72499 544 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257175558
MGI SNP Detail
Alliance Variant		 Chr7:45570265 Emp3 Intron
Emp3 mRNA-UTR
Rr646609 within coordinates of
Tssr72497 within coordinates of
Tssr72499 420 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225629167
MGI SNP Detail
Alliance Variant		 Chr7:45570385 Emp3 Intron
Rr646609 within coordinates of
Tssr72499 300 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238285447
MGI SNP Detail
Alliance Variant		 Chr7:45570401 Emp3 Intron
Rr646609 within coordinates of
Tssr72499 284 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264364949
MGI SNP Detail
Alliance Variant		 Chr7:45570412 Emp3 Intron
Rr646609 within coordinates of
Tssr72499 273 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50888447
MGI SNP Detail
Alliance Variant		 Chr7:45570491 Emp3 Intron
Rr646609 within coordinates of
Tssr72499 194 bp downstream
 SNP A/G A A A A A A A A A A A A G A A
rs236975444
MGI SNP Detail
Alliance Variant		 Chr7:45570496 Emp3 Intron
Rr646609 within coordinates of
Tssr72499 189 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253664774
MGI SNP Detail
Alliance Variant		 Chr7:45570566 Emp3 Intron
Emp3 mRNA-UTR
Rr646609 within coordinates of
Tssr72499 119 bp downstream
 SNP C/T C T T C C C C C C C T T C C C C C C C C C C T T T C C T T C C C C T C C C C C C T C C C C C C C C C C C C
rs219883355
MGI SNP Detail
Alliance Variant		 Chr7:45570620 Emp3 Intron
Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 65 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245552486
MGI SNP Detail
Alliance Variant		 Chr7:45570773 Emp3 mRNA-UTR
Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 37 bp upstream
 SNP C/T T C C T T T T T T T C C T T T T T T T T T T C C C T T C C T T T T C T T T T T T C T T T T T T T T T T T T
rs263427509
MGI SNP Detail
Alliance Variant		 Chr7:45570804 Emp3 mRNA-UTR
Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 68 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232087736
MGI SNP Detail		 Chr7:45570863 Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 127 bp upstream
Tssr72500 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248360458
MGI SNP Detail		 Chr7:45570892 Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 156 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs47521897
MGI SNP Detail		 Chr7:45570999 Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 263 bp upstream
 SNP C/T C C C C C C T C C C C C C
rs224821935
MGI SNP Detail		 Chr7:45571058 Rr400324 within coordinates of
Rr646609 within coordinates of
Tssr72499 322 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs243430175
MGI SNP Detail		 Chr7:45571080 Rr646609 within coordinates of
Tssr72499 344 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212212578
MGI SNP Detail		 Chr7:45571097 Rr646609 within coordinates of
Tssr72499 361 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231101241
MGI SNP Detail		 Chr7:45571212 Rr646609 within coordinates of
Tssr72499 476 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32489930
MGI SNP Detail		 Chr7:45571288 Rr646609 within coordinates of
Tssr72499 552 bp upstream
 SNP A/T T T T A
rs216836218
MGI SNP Detail		 Chr7:45571334 Tssr72499 598 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31628439
MGI SNP Detail		 Chr7:45571353 Tssr72499 617 bp upstream
 SNP A/G A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32441598
MGI SNP Detail		 Chr7:45571539 Rr646610 within coordinates of
Tssr72499 803 bp upstream
 SNP G/T T G G
rs32044665
MGI SNP Detail		 Chr7:45571563 Rr646610 within coordinates of
Tssr72499 827 bp upstream
 SNP G/T T G T
rs49901821
MGI SNP Detail		 Chr7:45571712 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 976 bp upstream
 SNP C/T T C
rs230930418
MGI SNP Detail		 Chr7:45571846 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1110 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs248445786
MGI SNP Detail		 Chr7:45571881 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1145 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219849789
MGI SNP Detail		 Chr7:45571907 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1171 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242911010
MGI SNP Detail		 Chr7:45571908 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1172 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs48730511
MGI SNP Detail		 Chr7:45571912 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1176 bp upstream
 SNP A/G A G A A A A A A A A A A A G G A
rs48306552
MGI SNP Detail		 Chr7:45571953 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1217 bp upstream
 SNP A/G G A G G G G G G G G G G G A G G
rs250776147
MGI SNP Detail		 Chr7:45572019 Gm45442 within coordinates of
Rr646610 within coordinates of
Tssr72499 1283 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260589785
MGI SNP Detail		 Chr7:45572191 Gm45442 within coordinates of
Rr368318 within coordinates of
Rr646610 within coordinates of
Tssr72499 1455 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49579181
MGI SNP Detail		 Chr7:45572252 Gm45442 within coordinates of
Rr368318 within coordinates of
Rr646610 within coordinates of
Tssr72499 1516 bp upstream
 SNP A/C A C C
rs31387016
MGI SNP Detail		 Chr7:45572439 Cpgi19109 within coordinates of
Gm45442 within coordinates of
Rr368319 within coordinates of
Rr646610 within coordinates of
Tssr72499 1703 bp upstream
 SNP C/T C T C
rs258248317
MGI SNP Detail
Alliance Variant		 Chr7:45572650 Cpgi19109 within coordinates of
Gm45442 within coordinates of
Odad1 mRNA-UTR
Rr368319 within coordinates of
Rr646611 within coordinates of
Tssr66661 within coordinates of
Tssr72499 1914 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231368204
MGI SNP Detail
Alliance Variant		 Chr7:45572691 Cpgi19109 within coordinates of
Gm45442 within coordinates of
Odad1 Intron
Rr368319 within coordinates of
Rr646611 within coordinates of
Tssr72499 1955 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250924119
MGI SNP Detail
Alliance Variant		 Chr7:45572700 Cpgi19109 within coordinates of
Gm45442 within coordinates of
Odad1 Intron
Rr368319 within coordinates of
Rr646611 within coordinates of
Tssr72499 1964 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 66 of 66
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory