About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr83616
transcription start site region 83616
MGI:6011383

<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246231641
MGI SNP Detail
Chr9:3402059 Tssr83616 1980 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs265508564
MGI SNP Detail
Chr9:3402192 Tssr83616 1847 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229215108
MGI SNP Detail
Chr9:3402389 Tssr83616 1650 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240770332
MGI SNP Detail
Chr9:3402391 Tssr83616 1648 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254342091
MGI SNP Detail
Chr9:3402523 Tssr83616 1516 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223152961
MGI SNP Detail
Chr9:3402540 Tssr83616 1499 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37161886
MGI SNP Detail
Chr9:3402591 Tssr83616 1448 bp upstream
SNP A/T A A A A A T T A
rs213464032
MGI SNP Detail
Chr9:3402617 Tssr83616 1422 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs230583656
MGI SNP Detail
Chr9:3402756 Tssr83616 1283 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253420421
MGI SNP Detail
Chr9:3402767 Tssr83616 1272 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs38342538
MGI SNP Detail
Chr9:3402773 Tssr83616 1266 bp upstream
SNP C/T C C C C C C C C C C C T C
rs236777108
MGI SNP Detail
Chr9:3402795 Tssr83616 1244 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585301833
MGI SNP Detail
Chr9:3402816 Tssr83616 1223 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs37191492
MGI SNP Detail
Chr9:3402817 Tssr83616 1222 bp upstream
SNP A/C C C C C C A C C A C C
rs578441534
MGI SNP Detail
Chr9:3402821 Tssr83616 1218 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs212967138
MGI SNP Detail
Chr9:3402994 Tssr83616 1045 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs229927397
MGI SNP Detail
Chr9:3403000 Tssr83616 1039 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262567324
MGI SNP Detail
Chr9:3403159 Rr673634 within coordinates of
Tssr83616 880 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36482227
MGI SNP Detail
Chr9:3403195 Rr673634 within coordinates of
Tssr83616 844 bp upstream
SNP A/G G G G G G A G G A G G A G
rs582084644
MGI SNP Detail
Chr9:3403214 Rr673634 within coordinates of
Tssr83616 825 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586449365
MGI SNP Detail
Chr9:3403231 Rr673634 within coordinates of
Tssr83616 808 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs580557537
MGI SNP Detail
Chr9:3403266 Rr673634 within coordinates of
Tssr83616 773 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248846773
MGI SNP Detail
Chr9:3403340 Rr673634 within coordinates of
Tssr83616 699 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs258530443
MGI SNP Detail
Chr9:3403405 Rr401237 within coordinates of
Rr673634 within coordinates of
Tssr83616 634 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs222517795
MGI SNP Detail
Chr9:3403567 Rr401237 within coordinates of
Rr673634 within coordinates of
Tssr83616 472 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240830248
MGI SNP Detail
Chr9:3403578 Rr401237 within coordinates of
Rr673634 within coordinates of
Tssr83616 461 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs254577202
MGI SNP Detail
Chr9:3403585 Rr401237 within coordinates of
Rr673634 within coordinates of
Tssr83616 454 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217705490
MGI SNP Detail
Chr9:3403633 Cwf19l2 within coordinates of
Rr401237 within coordinates of
Rr673637 within coordinates of
Tssr83616 406 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243715166
MGI SNP Detail
Chr9:3403662 Cwf19l2 within coordinates of
Rr401237 within coordinates of
Rr673637 within coordinates of
Tssr83616 377 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265024304
MGI SNP Detail
Chr9:3403727 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 312 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs583627568
MGI SNP Detail
Chr9:3403734 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 305 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232173961
MGI SNP Detail
Chr9:3403747 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 292 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs256920434
MGI SNP Detail
Chr9:3403751 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 288 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A A C A A A A A A C A A A A A A A C A A A A
rs259407122
MGI SNP Detail
Chr9:3403752 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 287 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs229445451
MGI SNP Detail
Chr9:3403774 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 265 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs248396096
MGI SNP Detail
Chr9:3403955 Cpgi21331 within coordinates of
Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 84 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs37146448
MGI SNP Detail
Chr9:3404027 Cpgi21331 within coordinates of
Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 12 bp upstream
SNP C/T C C C C C C C C C C C C T C
rs39169332
MGI SNP Detail
Chr9:3404065 Cpgi21331 within coordinates of
Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 15 bp downstream
Tssr83617 within coordinates of
SNP C/T C C C C C C C C T C T C
rs251586901
MGI SNP Detail
Chr9:3404096 Cpgi21331 within coordinates of
Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 46 bp downstream
Tssr83617 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs39048871
MGI SNP Detail
Chr9:3404109 Cpgi21331 within coordinates of
Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 59 bp downstream
SNP C/T T T T T T T T T C T C T
rs238853796
MGI SNP Detail
Chr9:3404245 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 195 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262980872
MGI SNP Detail
Chr9:3404413 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 363 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs222575112
MGI SNP Detail
Chr9:3404447 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 397 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs36681372
MGI SNP Detail
Chr9:3404527 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 477 bp downstream
SNP C/G C C C C C C C C C C C C C G C
rs37865670
MGI SNP Detail
Chr9:3404540 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 490 bp downstream
SNP A/C A A A A A C A A A C A C A
rs217935054
MGI SNP Detail
Chr9:3404556 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 506 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246791583
MGI SNP Detail
Chr9:3404577 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 527 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262207732
MGI SNP Detail
Chr9:3404772 Cwf19l2 within coordinates of
Rr673637 within coordinates of
Tssr83616 722 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T G T T T T
rs37348201
MGI SNP Detail
Chr9:3404795 Cwf19l2 within coordinates of
Tssr83616 745 bp downstream
SNP C/T T T T T T T T C T
rs244939055
MGI SNP Detail
Chr9:3404858 Cwf19l2 within coordinates of
Tssr83616 808 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261073849
MGI SNP Detail
Chr9:3404859 Cwf19l2 within coordinates of
Tssr83616 809 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229500932
MGI SNP Detail
Chr9:3404909 Cwf19l2 within coordinates of
Tssr83616 859 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248262811
MGI SNP Detail
Chr9:3405038 Cwf19l2 within coordinates of
Tssr83616 988 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs257176172
MGI SNP Detail
Chr9:3405114 Cwf19l2 within coordinates of
Tssr83616 1064 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228155210
MGI SNP Detail
Chr9:3405132 Cwf19l2 within coordinates of
Tssr83616 1082 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256675247
MGI SNP Detail
Chr9:3405148 Cwf19l2 within coordinates of
Tssr83616 1098 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213886414
MGI SNP Detail
Chr9:3405257 Cwf19l2 within coordinates of
Tssr83616 1207 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs241134176
MGI SNP Detail
Chr9:3405385 Cwf19l2 within coordinates of
Tssr83616 1335 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A
rs38012593
MGI SNP Detail
Chr9:3405439 Cwf19l2 within coordinates of
Tssr83616 1389 bp downstream
SNP A/T A A A A A A A A A T A T A
rs217427781
MGI SNP Detail
Chr9:3405511 Cwf19l2 within coordinates of
Tssr83616 1461 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234223937
MGI SNP Detail
Chr9:3405573 Cwf19l2 within coordinates of
Tssr83616 1523 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A G A A A G A A A A A A A A A A A A A A G A A A A
rs248797186
MGI SNP Detail
Chr9:3405582 Cwf19l2 within coordinates of
Tssr83616 1532 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs219889172
MGI SNP Detail
Chr9:3405629 Cwf19l2 within coordinates of
Tssr83616 1579 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236986687
MGI SNP Detail
Chr9:3405696 Cwf19l2 within coordinates of
Tssr83616 1646 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs261985647
MGI SNP Detail
Chr9:3405733 Cwf19l2 within coordinates of
Tssr83616 1683 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224688340
MGI SNP Detail
Chr9:3405911 Cwf19l2 within coordinates of
Tssr83616 1861 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T
rs247392197
MGI SNP Detail
Chr9:3405953 Cwf19l2 within coordinates of
Tssr83616 1903 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory