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Mouse SNP Summary
Symbol
Name
ID 		Tssr84200
transcription start site region 84200
MGI:6011967

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Showing SNP(s) 1 - 74 of 74

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46529557
MGI SNP Detail		 Chr9:29351746 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1922 bp upstream
 SNP C/T C C C T
rs247001187
MGI SNP Detail		 Chr9:29351768 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1900 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C T T C T C C T C C C C T C C C T T T C T T T T C T C C C C C C C C T C C C
rs51624248
MGI SNP Detail		 Chr9:29351780 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1888 bp upstream
 SNP A/G G G G A
rs234232148
MGI SNP Detail		 Chr9:29351793 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1875 bp upstream
 SNP A/G G G G G A G G G G G G G G G G G A A G G G G G G G G G G G G G A A G G A A A A G G G G G G G G G G A G G G
rs248339428
MGI SNP Detail		 Chr9:29351846 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1822 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36296969
MGI SNP Detail		 Chr9:29351864 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1804 bp upstream
 SNP A/G G G A G G G G G G G G A G G
rs226099978
MGI SNP Detail		 Chr9:29351986 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1682 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51482523
MGI SNP Detail		 Chr9:29352028 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1640 bp upstream
 SNP C/T T T C
rs51500598
MGI SNP Detail		 Chr9:29352036 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1632 bp upstream
 SNP A/C C C A
rs47949188
MGI SNP Detail		 Chr9:29352042 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1626 bp upstream
 SNP C/T C T
rs39977447
MGI SNP Detail		 Chr9:29352048 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1620 bp upstream
 SNP C/T T T T T T T C C C C T C C
rs219128044
MGI SNP Detail		 Chr9:29352051 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1617 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs237946051
MGI SNP Detail		 Chr9:29352053 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1615 bp upstream
 SNP C/T T T T T C T T T T T T T T T T T C C T C T T C T T T T C T T T C C C T C C C C T C T T T T T T T C C T T T
rs254615310
MGI SNP Detail		 Chr9:29352095 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1573 bp upstream
 SNP A A A
rs37005520
MGI SNP Detail		 Chr9:29352100 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1568 bp upstream
 SNP C/T T T T T T T T C T T C C T C
rs232050093
MGI SNP Detail		 Chr9:29352136 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1532 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48775538
MGI SNP Detail		 Chr9:29352168 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1500 bp upstream
 SNP G/T G G T
rs37354933
MGI SNP Detail		 Chr9:29352199 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1469 bp upstream
 SNP A/G G G G G G G G G G G A A G G G G
rs218608770
MGI SNP Detail		 Chr9:29352340 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1328 bp upstream
 SNP A/G A G
rs241765456
MGI SNP Detail		 Chr9:29352341 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1327 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260642508
MGI SNP Detail		 Chr9:29352395 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1273 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223836041
MGI SNP Detail		 Chr9:29352419 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1249 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36537905
MGI SNP Detail		 Chr9:29352511 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1157 bp upstream
 SNP C/G G G G G G G C G G G C G G C G
rs260316765
MGI SNP Detail		 Chr9:29352601 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1067 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs219877571
MGI SNP Detail		 Chr9:29352602 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1066 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240013765
MGI SNP Detail		 Chr9:29352614 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 1054 bp upstream
 SNP A/C C C C C A C C C C C C C C C C C A A C C C C C C C C C C C C C A A C C A A A A C C C C C C C C C C A C C C
rs256237254
MGI SNP Detail		 Chr9:29352750 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 918 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236641188
MGI SNP Detail		 Chr9:29352751 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 917 bp upstream
 SNP A/G A G
rs229024061
MGI SNP Detail		 Chr9:29352781 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 887 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259415469
MGI SNP Detail		 Chr9:29352810 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 858 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs36639627
MGI SNP Detail		 Chr9:29352914 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 754 bp upstream
 SNP A/T A A A A A A T A A A T A A A A
rs232262189
MGI SNP Detail		 Chr9:29353009 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 659 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C T C C C C C C C C C C C C C C C C C C C
rs580303217
MGI SNP Detail		 Chr9:29353036 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 632 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246039148
MGI SNP Detail		 Chr9:29353150 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 518 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213634869
MGI SNP Detail		 Chr9:29353188 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 480 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232086084
MGI SNP Detail		 Chr9:29353230 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 438 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242198779
MGI SNP Detail		 Chr9:29353262 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 406 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213044691
MGI SNP Detail		 Chr9:29353298 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 370 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239356219
MGI SNP Detail		 Chr9:29353342 Gm68891 within coordinates of
Ntm within coordinates of
Tssr84200 326 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264118648
MGI SNP Detail		 Chr9:29353442 Ntm within coordinates of
Tssr84200 226 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223969029
MGI SNP Detail		 Chr9:29353486 Ntm within coordinates of
Tssr84200 182 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs234488492
MGI SNP Detail		 Chr9:29353492 Ntm within coordinates of
Tssr84200 176 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250890232
MGI SNP Detail		 Chr9:29353528 Ntm within coordinates of
Tssr84200 140 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs246796719
MGI SNP Detail		 Chr9:29353604 Ntm within coordinates of
Tssr84200 64 bp upstream
 SNP T T T
rs214950899
MGI SNP Detail		 Chr9:29353692 Ntm within coordinates of
Tssr84200 7 bp downstream
 SNP A A A
rs256369469
MGI SNP Detail		 Chr9:29353698 Ntm within coordinates of
Tssr84200 13 bp downstream
Tssr84201 within coordinates of
 SNP A/C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221478137
MGI SNP Detail		 Chr9:29353789 Ntm within coordinates of
Tssr84200 104 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234595379
MGI SNP Detail		 Chr9:29353806 Ntm within coordinates of
Tssr84200 121 bp downstream
 SNP T T T
rs583798558
MGI SNP Detail		 Chr9:29353839 Ntm within coordinates of
Tssr84200 154 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587223584
MGI SNP Detail		 Chr9:29353969 Ntm within coordinates of
Tssr84200 284 bp downstream
 SNP C/T C C C C C C C C C C C C C C C T C C C T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580492795
MGI SNP Detail		 Chr9:29353989 Ntm within coordinates of
Tssr84200 304 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T C T T
rs247773650
MGI SNP Detail		 Chr9:29354122 Ntm within coordinates of
Tssr84200 437 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs266196606
MGI SNP Detail		 Chr9:29354136 Ntm within coordinates of
Tssr84200 451 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231782567
MGI SNP Detail		 Chr9:29354225 Ntm within coordinates of
Tssr84200 540 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs246073476
MGI SNP Detail		 Chr9:29354320 Ntm within coordinates of
Tssr84200 635 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255424773
MGI SNP Detail		 Chr9:29354337 Ntm within coordinates of
Tssr84200 652 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256764297
MGI SNP Detail		 Chr9:29354404 Ntm within coordinates of
Tssr84200 719 bp downstream
 SNP C/T C T
rs242326910
MGI SNP Detail		 Chr9:29354430 Ntm within coordinates of
Tssr84200 745 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212800554
MGI SNP Detail		 Chr9:29354479 Ntm within coordinates of
Tssr84200 794 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233957899
MGI SNP Detail		 Chr9:29354640 Ntm within coordinates of
Tssr84200 955 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs37295283
MGI SNP Detail		 Chr9:29354910 Ntm within coordinates of
Tssr84200 1225 bp downstream
 SNP C/T T T T T T T T T C T C C T
rs583671731
MGI SNP Detail		 Chr9:29354923 Ntm within coordinates of
Tssr84200 1238 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs215921526
MGI SNP Detail		 Chr9:29354964 Ntm within coordinates of
Tssr84200 1279 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36923549
MGI SNP Detail		 Chr9:29355012 Ntm within coordinates of
Tssr84200 1327 bp downstream
 SNP C/T T T C T T T C T C C C C C C C
rs250925098
MGI SNP Detail		 Chr9:29355053 Ntm within coordinates of
Tssr84200 1368 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs214124685
MGI SNP Detail		 Chr9:29355138 Ntm within coordinates of
Tssr84200 1453 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs229664408
MGI SNP Detail		 Chr9:29355269 Ntm within coordinates of
Tssr84200 1584 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs261219259
MGI SNP Detail		 Chr9:29355402 Ntm within coordinates of
Tssr84200 1717 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs234335202
MGI SNP Detail		 Chr9:29355416 Ntm within coordinates of
Tssr84200 1731 bp downstream
 SNP A/G A G
rs261502285
MGI SNP Detail		 Chr9:29355474 Ntm within coordinates of
Tssr84200 1789 bp downstream
 SNP A/C C A
rs586752679
MGI SNP Detail		 Chr9:29355509 Ntm within coordinates of
Tssr84200 1824 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580587790
MGI SNP Detail		 Chr9:29355547 Ntm within coordinates of
Tssr84200 1862 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222095130
MGI SNP Detail		 Chr9:29355580 Ntm within coordinates of
Tssr84200 1895 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs250524287
MGI SNP Detail		 Chr9:29355597 Ntm within coordinates of
Tssr84200 1912 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...