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Mouse SNP Summary
Symbol
Name
ID 		Tssr84517
transcription start site region 84517
MGI:6012284

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261789952
MGI SNP Detail		 Chr9:41489526 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1773 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222925119
MGI SNP Detail		 Chr9:41489555 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1744 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29785659
MGI SNP Detail		 Chr9:41489653 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1646 bp upstream
 SNP C/T C C C T C C C
rs33665029
MGI SNP Detail		 Chr9:41489665 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1634 bp upstream
 SNP A/G A A A G A G G G G A A A G A G A A
rs222111129
MGI SNP Detail		 Chr9:41489700 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1599 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs48227304
MGI SNP Detail		 Chr9:41489809 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1490 bp upstream
 SNP C/T T T T T T T T T T T T T C T
rs29650351
MGI SNP Detail		 Chr9:41490008 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1291 bp upstream
 SNP A/G A A A G A A A
rs224315963
MGI SNP Detail		 Chr9:41490030 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1269 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs249961634
MGI SNP Detail		 Chr9:41490050 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1249 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs264864918
MGI SNP Detail		 Chr9:41490063 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1236 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30466701
MGI SNP Detail		 Chr9:41490076 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1223 bp upstream
 SNP A/T A A A T A A A A T A A T A A A
rs578789323
MGI SNP Detail		 Chr9:41490155 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1144 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256194404
MGI SNP Detail		 Chr9:41490207 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1092 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215092167
MGI SNP Detail		 Chr9:41490214 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1085 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233437066
MGI SNP Detail		 Chr9:41490215 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1084 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29639497
MGI SNP Detail		 Chr9:41490242 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1057 bp upstream
 SNP A/G G G G G G A A G G G G G A G A A G G
rs50592112
MGI SNP Detail		 Chr9:41490280 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 1019 bp upstream
 SNP A/C C C A C C C A C C C C C C C
rs235926254
MGI SNP Detail		 Chr9:41490344 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 955 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255943976
MGI SNP Detail		 Chr9:41490439 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 860 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221645520
MGI SNP Detail		 Chr9:41490445 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 854 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29633536
MGI SNP Detail		 Chr9:41490492 Gm51670 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 807 bp upstream
 SNP C/T C C C C C C T C C C C C C T C C
rs263089795
MGI SNP Detail		 Chr9:41490592 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 707 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222166504
MGI SNP Detail		 Chr9:41490593 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 706 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242243238
MGI SNP Detail		 Chr9:41490616 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 683 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs51752634
MGI SNP Detail		 Chr9:41490751 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677060 within coordinates of
Tssr84517 548 bp upstream
 SNP A/G G G A G G G A G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30276549
MGI SNP Detail		 Chr9:41490901 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677061 within coordinates of
Tssr84517 398 bp upstream
 SNP A/G G G G A G G G
rs29882260
MGI SNP Detail		 Chr9:41491116 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677061 within coordinates of
Tssr84517 183 bp upstream
 SNP C/T T T T C T C C T C C C C C C T T
rs33692473
MGI SNP Detail		 Chr9:41491412 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 99 bp downstream
 SNP A/G A A G A A A
rs231232336
MGI SNP Detail		 Chr9:41491419 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 106 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244118850
MGI SNP Detail		 Chr9:41491449 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 136 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52269074
MGI SNP Detail		 Chr9:41491488 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 175 bp downstream
 SNP A/T T T T T A T T T T A T T
rs261541128
MGI SNP Detail		 Chr9:41491539 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84517 226 bp downstream
 SNP C/G G C
rs257178933
MGI SNP Detail		 Chr9:41491600 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 287 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227478079
MGI SNP Detail		 Chr9:41491622 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 309 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs46171048
MGI SNP Detail		 Chr9:41491651 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 338 bp downstream
 SNP A/G G G G G G A G G G G G G G G
rs50042369
MGI SNP Detail		 Chr9:41491715 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 402 bp downstream
 SNP C/T T T T T T C T T T C T C T T
rs227423630
MGI SNP Detail		 Chr9:41491746 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 433 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253658950
MGI SNP Detail		 Chr9:41491792 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 479 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213376656
MGI SNP Detail		 Chr9:41492206 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 893 bp downstream
Tssr84520 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs238677658
MGI SNP Detail		 Chr9:41492513 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 1200 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs30317864
MGI SNP Detail		 Chr9:41492647 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677062 within coordinates of
Tssr84517 1334 bp downstream
Tssr84526 within coordinates of
 SNP G/T G G T G G
rs51536939
MGI SNP Detail		 Chr9:41492653 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677063 within coordinates of
Tssr84517 1340 bp downstream
 SNP C/G G G G G G G G G C C G G
rs30471965
MGI SNP Detail		 Chr9:41492682 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677063 within coordinates of
Tssr84517 1369 bp downstream
 SNP G/T G G G G G T G G G G G T G T G G
rs255529379
MGI SNP Detail		 Chr9:41492706 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677063 within coordinates of
Tssr84517 1393 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs49904499
MGI SNP Detail		 Chr9:41492757 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677063 within coordinates of
Tssr84517 1444 bp downstream
 SNP A/G A A A A A A A A A A A G A
rs242418500
MGI SNP Detail		 Chr9:41493031 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677065 within coordinates of
Tssr84517 1718 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262098177
MGI SNP Detail		 Chr9:41493082 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677065 within coordinates of
Tssr84517 1769 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223557874
MGI SNP Detail		 Chr9:41493105 Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677065 within coordinates of
Tssr84517 1792 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247874987
MGI SNP Detail		 Chr9:41493212 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Rr677065 within coordinates of
Tssr84517 1899 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory