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Mouse SNP Summary
Symbol
Name
ID 		Tssr84526
transcription start site region 84526
MGI:6012293

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Showing SNP(s) 1 - 46 of 46

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51752634
MGI SNP Detail		 Chr9:41490751 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1876 bp upstream
 SNP A/G G G A G G G A G G G G G G
rs30276549
MGI SNP Detail		 Chr9:41490901 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1726 bp upstream
 SNP A/G G G G A G G G
rs29882260
MGI SNP Detail		 Chr9:41491116 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1511 bp upstream
 SNP C/T T T T C T C C T C C C C C C T T
rs33692473
MGI SNP Detail		 Chr9:41491412 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1215 bp upstream
 SNP A/G A A G A A A
rs231232336
MGI SNP Detail		 Chr9:41491419 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1208 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244118850
MGI SNP Detail		 Chr9:41491449 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1178 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52269074
MGI SNP Detail		 Chr9:41491488 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1139 bp upstream
 SNP A/T T T T T A T T T T A T T
rs261541128
MGI SNP Detail		 Chr9:41491539 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1088 bp upstream
 SNP C/G G C
rs257178933
MGI SNP Detail		 Chr9:41491600 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1027 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227478079
MGI SNP Detail		 Chr9:41491622 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1005 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs46171048
MGI SNP Detail		 Chr9:41491651 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 976 bp upstream
 SNP A/G G G G G G A G G G G G G G G
rs50042369
MGI SNP Detail		 Chr9:41491715 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 912 bp upstream
 SNP C/T T T T T T C T T T C T C T T
rs227423630
MGI SNP Detail		 Chr9:41491746 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 881 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253658950
MGI SNP Detail		 Chr9:41491792 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 835 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213376656
MGI SNP Detail		 Chr9:41492206 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84520 within coordinates of
Tssr84526 421 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs238677658
MGI SNP Detail		 Chr9:41492513 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 114 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs30317864
MGI SNP Detail		 Chr9:41492647 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 within coordinates of
 SNP G/T G G T G G
rs51536939
MGI SNP Detail		 Chr9:41492653 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 6 bp downstream
 SNP C/G G G G G G G G G C C G G
rs30471965
MGI SNP Detail		 Chr9:41492682 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 35 bp downstream
 SNP G/T G G G G G T G G G G G T G T G G
rs255529379
MGI SNP Detail		 Chr9:41492706 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 59 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs49904499
MGI SNP Detail		 Chr9:41492757 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 110 bp downstream
 SNP A/G A A A A A A A A A A A G A
rs242418500
MGI SNP Detail		 Chr9:41493031 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 384 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262098177
MGI SNP Detail		 Chr9:41493082 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 435 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223557874
MGI SNP Detail		 Chr9:41493105 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 458 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247874987
MGI SNP Detail		 Chr9:41493212 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 565 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52553687
MGI SNP Detail		 Chr9:41493318 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 671 bp downstream
 SNP A/G G G G G G A G G G G G G G G
rs52092826
MGI SNP Detail		 Chr9:41493421 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 774 bp downstream
 SNP C/G G C
rs581878673
MGI SNP Detail		 Chr9:41493423 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 776 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs52530395
MGI SNP Detail		 Chr9:41493429 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 782 bp downstream
 SNP C/G G C
rs585507815
MGI SNP Detail		 Chr9:41493431 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 784 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs52364883
MGI SNP Detail		 Chr9:41493437 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 790 bp downstream
 SNP C/G G C
rs227537439
MGI SNP Detail		 Chr9:41493596 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 949 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs240772321
MGI SNP Detail		 Chr9:41493652 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1005 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29729612
MGI SNP Detail		 Chr9:41493813 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1166 bp downstream
 SNP A/T T T T T T T A A T T T T T T A T T
rs227947617
MGI SNP Detail		 Chr9:41493925 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1278 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs249701503
MGI SNP Detail		 Chr9:41494000 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1353 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30334043
MGI SNP Detail		 Chr9:41494050 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1403 bp downstream
 SNP A/T A A A A A A T T A A A A T A T A A
rs30526460
MGI SNP Detail		 Chr9:41494105 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1458 bp downstream
 SNP A/G A A A A A A G G A A A A G A G A A
rs246151465
MGI SNP Detail		 Chr9:41494144 Gm28119 within coordinates of
Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1497 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T
rs260554982
MGI SNP Detail		 Chr9:41494154 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1507 bp downstream
 SNP C/G G C
rs215574318
MGI SNP Detail		 Chr9:41494160 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1513 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235943858
MGI SNP Detail		 Chr9:41494238 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1591 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255593584
MGI SNP Detail		 Chr9:41494249 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1602 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29695081
MGI SNP Detail		 Chr9:41494366 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1719 bp downstream
 SNP A/G A A A A A G G A A A G A A
rs237463589
MGI SNP Detail		 Chr9:41494367 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1720 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579787134
MGI SNP Detail		 Chr9:41494569 Gm69589 within coordinates of
Mir100hg within coordinates of
Tssr84526 1922 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 46 of 46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory