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Mouse SNP Summary
Symbol
Name
ID 		Tssr85252
transcription start site region 85252
MGI:6013019

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Showing SNP(s) 1 - 48 of 48

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228305443
MGI SNP Detail		 Chr9:56323729 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1942 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs38539722
MGI SNP Detail		 Chr9:56323770 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1901 bp upstream
 SNP A/G A A A A G A A A A A A A A A A
rs263282014
MGI SNP Detail		 Chr9:56324079 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1592 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs233334792
MGI SNP Detail		 Chr9:56324116 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1555 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250850054
MGI SNP Detail		 Chr9:56324158 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1513 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs214471634
MGI SNP Detail		 Chr9:56324183 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1488 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224243929
MGI SNP Detail		 Chr9:56324360 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1311 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244649758
MGI SNP Detail		 Chr9:56324385 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1286 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216999454
MGI SNP Detail		 Chr9:56324395 Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 1276 bp upstream
 SNP A/C C C C C C C C C A C C C C C C C C C C A A C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
rs240640573
MGI SNP Detail		 Chr9:56324699 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 972 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263061681
MGI SNP Detail		 Chr9:56324712 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 959 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29746420
MGI SNP Detail		 Chr9:56324726 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 945 bp upstream
 SNP A/G G G A G G A
rs240725898
MGI SNP Detail		 Chr9:56324747 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 924 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs579404387
MGI SNP Detail		 Chr9:56324866 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 805 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs256826622
MGI SNP Detail		 Chr9:56325077 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 594 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219821900
MGI SNP Detail		 Chr9:56325169 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 502 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235592363
MGI SNP Detail		 Chr9:56325219 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 452 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs248919758
MGI SNP Detail		 Chr9:56325239 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Tssr85252 432 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221924049
MGI SNP Detail		 Chr9:56325321 Cpgi21795 within coordinates of
Peak1 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 350 bp upstream
Tssr89707 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248271929
MGI SNP Detail		 Chr9:56325366 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 305 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265475671
MGI SNP Detail		 Chr9:56325389 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 282 bp upstream
Tssr89709 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232216092
MGI SNP Detail		 Chr9:56325487 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 184 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs246172563
MGI SNP Detail		 Chr9:56325525 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 146 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258492988
MGI SNP Detail		 Chr9:56325594 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Rr401386 within coordinates of
Tssr85252 77 bp upstream
 SNP A/G A A A A A A A A G A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224319956
MGI SNP Detail		 Chr9:56325753 Cpgi21795 within coordinates of
Rr206471 within coordinates of
Tssr85252 70 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244340709
MGI SNP Detail		 Chr9:56325977 Cpgi21795 within coordinates of
Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 294 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216723570
MGI SNP Detail		 Chr9:56326664 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 981 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs235764471
MGI SNP Detail		 Chr9:56326683 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1000 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252646685
MGI SNP Detail		 Chr9:56326748 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1065 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs13480213
MGI SNP Detail		 Chr9:56326852 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1169 bp downstream
 SNP A/T T T A A A A A A A A A A A A T A T T A A A A A A T A A A A T A A A A A A A A A A A A A A
rs236457017
MGI SNP Detail		 Chr9:56326857 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1174 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249521367
MGI SNP Detail		 Chr9:56326905 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1222 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214160792
MGI SNP Detail		 Chr9:56326932 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1249 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs229684414
MGI SNP Detail		 Chr9:56326948 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1265 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248632752
MGI SNP Detail		 Chr9:56326995 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1312 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225402688
MGI SNP Detail		 Chr9:56327005 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1322 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251269547
MGI SNP Detail		 Chr9:56327026 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1343 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258581309
MGI SNP Detail		 Chr9:56327077 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1394 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225091728
MGI SNP Detail		 Chr9:56327105 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1422 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242966987
MGI SNP Detail		 Chr9:56327113 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1430 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258538201
MGI SNP Detail		 Chr9:56327183 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1500 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224399245
MGI SNP Detail		 Chr9:56327282 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1599 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238214121
MGI SNP Detail		 Chr9:56327371 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1688 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs260698750
MGI SNP Detail		 Chr9:56327395 Hmg20a within coordinates of
Rr206471 within coordinates of
Tssr85252 1712 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G G
rs233902874
MGI SNP Detail		 Chr9:56327409 Hmg20a within coordinates of
Tssr85252 1726 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257786861
MGI SNP Detail		 Chr9:56327528 Hmg20a within coordinates of
Tssr85252 1845 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263818201
MGI SNP Detail		 Chr9:56327587 Hmg20a within coordinates of
Tssr85252 1904 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230573353
MGI SNP Detail		 Chr9:56327672 Hmg20a within coordinates of
Tssr85252 1989 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 48 of 48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory