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Mouse SNP Summary
Symbol
Name
ID
Tssr85287
transcription start site region 85287
MGI:6013054

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Showing SNP(s) 1 - 52 of 52

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250540406
MGI SNP Detail
Alliance Variant
Chr9:56981704 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1975 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218053188
MGI SNP Detail
Alliance Variant
Chr9:56981810 Cpgi21808 within coordinates of
Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1869 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578371584
MGI SNP Detail
Alliance Variant
Chr9:56981821 Cpgi21808 within coordinates of
Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1858 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581846913
MGI SNP Detail
Alliance Variant
Chr9:56981826 Cpgi21808 within coordinates of
Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1853 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236869574
MGI SNP Detail
Alliance Variant
Chr9:56981833 Cpgi21808 within coordinates of
Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1846 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259270669
MGI SNP Detail
Alliance Variant
Chr9:56981907 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1772 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs226932147
MGI SNP Detail
Alliance Variant
Chr9:56981910 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1769 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251019884
MGI SNP Detail
Alliance Variant
Chr9:56982008 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1671 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263125087
MGI SNP Detail
Alliance Variant
Chr9:56982015 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1664 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs584557007
MGI SNP Detail
Alliance Variant
Chr9:56982045 Gm57026 within coordinates of
Sin3a Intron
Tssr85287 1634 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A T A A A A A A A A A A A A
rs578619998
MGI SNP Detail
Alliance Variant
Chr9:56982056 Sin3a Intron
Tssr85287 1623 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T C T T T T T T T T T T T T T T T T T T
rs233019045
MGI SNP Detail
Alliance Variant
Chr9:56982063 Sin3a Intron
Tssr85287 1616 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250715748
MGI SNP Detail
Alliance Variant
Chr9:56982071 Sin3a Intron
Tssr85287 1608 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A T T A A A A A A T A A A A A A A A A A A A
rs258002752
MGI SNP Detail
Alliance Variant
Chr9:56982074 Sin3a Intron
Tssr85287 1605 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T T G G G G G G T G G G G G G G T T G G G
rs223958629
MGI SNP Detail
Alliance Variant
Chr9:56982133 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1546 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T T C C C C C C T C C C C C C C T C C C C
rs244052247
MGI SNP Detail
Alliance Variant
Chr9:56982202 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1477 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216434005
MGI SNP Detail
Alliance Variant
Chr9:56982205 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1474 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233654106
MGI SNP Detail
Alliance Variant
Chr9:56982213 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1466 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582543366
MGI SNP Detail
Alliance Variant
Chr9:56982390 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1289 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257561783
MGI SNP Detail
Alliance Variant
Chr9:56982399 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1280 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T G G T T T T T T G T T T T T T T G T T T T
rs585658886
MGI SNP Detail
Alliance Variant
Chr9:56982400 Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1279 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217160844
MGI SNP Detail
Alliance Variant
Chr9:56982461 Rr401392 within coordinates of
Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1218 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238546972
MGI SNP Detail
Alliance Variant
Chr9:56982483 Rr401392 within coordinates of
Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1196 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250886433
MGI SNP Detail
Alliance Variant
Chr9:56982488 2700012I20Rik within coordinates of
Rr401392 within coordinates of
Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1191 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C C G G G G G G C G G G G G G G C C G G G
rs212142733
MGI SNP Detail
Alliance Variant
Chr9:56982542 2700012I20Rik within coordinates of
Rr401392 within coordinates of
Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1137 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230754576
MGI SNP Detail
Alliance Variant
Chr9:56982596 2700012I20Rik within coordinates of
Rr401392 within coordinates of
Rr679586 within coordinates of
Sin3a Intron
Tssr85287 1083 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T C C T T T T T T C T T T T T T T T T T T T
rs252682649
MGI SNP Detail
Alliance Variant
Chr9:56982797 2700012I20Rik within coordinates of
Rr679587 within coordinates of
Sin3a Intron
Tssr85287 882 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs227342859
MGI SNP Detail
Alliance Variant
Chr9:56982978 2700012I20Rik within coordinates of
Cpgi21809 within coordinates of
Rr679587 within coordinates of
Sin3a Intron
Tssr85287 701 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245516355
MGI SNP Detail
Alliance Variant
Chr9:56982983 2700012I20Rik within coordinates of
Cpgi21809 within coordinates of
Rr679587 within coordinates of
Sin3a Intron
Tssr85287 696 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C G G C C C C C C G C C C C C C G G C C C
rs262822233
MGI SNP Detail
Alliance Variant
Chr9:56983546 Cpgi21809 within coordinates of
Rr679589 within coordinates of
Sin3a Intron
Tssr85287 133 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C T T C C C C C C T C C C C C C C C C C C
rs580611360
MGI SNP Detail
Alliance Variant
Chr9:56983718 Cpgi21809 within coordinates of
Rr679590 within coordinates of
Sin3a Intron
Sin3a mRNA-UTR
Tssr85287 23 bp downstream
SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224881634
MGI SNP Detail
Alliance Variant
Chr9:56983836 Cpgi21809 within coordinates of
Rr679590 within coordinates of
Sin3a Intron
Sin3a mRNA-UTR
Tssr85287 141 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238831726
MGI SNP Detail
Alliance Variant
Chr9:56983888 Cpgi21809 within coordinates of
Rr679590 within coordinates of
Sin3a Intron
Sin3a mRNA-UTR
Tssr85287 193 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A G G A A A A A A G A A A A A A G G A A A
rs582864889
MGI SNP Detail
Alliance Variant
Chr9:56984247 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 552 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs30527121
MGI SNP Detail
Alliance Variant
Chr9:56984392 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 697 bp downstream
SNP C/T C T
rs224196688
MGI SNP Detail
Alliance Variant
Chr9:56984464 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 769 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237688617
MGI SNP Detail
Alliance Variant
Chr9:56984484 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 789 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C T T C C C C C C T C C C C C C C C C C C
rs260385548
MGI SNP Detail
Alliance Variant
Chr9:56984491 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 796 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs234702672
MGI SNP Detail
Alliance Variant
Chr9:56984561 Cpgi21809 within coordinates of
Rr679591 within coordinates of
Sin3a Intron
Tssr85287 866 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G A A G G G G G G A G G G G G G G G G G G G
rs252080996
MGI SNP Detail
Alliance Variant
Chr9:56984680 Cpgi21809 within coordinates of
Sin3a Intron
Tssr85287 985 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217486881
MGI SNP Detail
Alliance Variant
Chr9:56984754 Cpgi21809 within coordinates of
Sin3a Intron
Tssr85287 1059 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T A A T T T T T T A T T T T T T T T T T T
rs230394511
MGI SNP Detail
Alliance Variant
Chr9:56984772 Cpgi21809 within coordinates of
Sin3a Intron
Tssr85287 1077 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244810624
MGI SNP Detail
Alliance Variant
Chr9:56984859 Sin3a Intron
Tssr85287 1164 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212412953
MGI SNP Detail
Alliance Variant
Chr9:56984935 Sin3a Intron
Tssr85287 1240 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231064302
MGI SNP Detail
Alliance Variant
Chr9:56984946 Sin3a Intron
Tssr85287 1251 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252659173
MGI SNP Detail
Alliance Variant
Chr9:56984947 Sin3a Intron
Tssr85287 1252 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs579657370
MGI SNP Detail
Alliance Variant
Chr9:56984961 Sin3a Intron
Tssr85287 1266 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219358211
MGI SNP Detail
Alliance Variant
Chr9:56985304 Sin3a Intron
Tssr85287 1609 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G C C G G G G G G C G G G G G G G G G G G G
rs240154371
MGI SNP Detail
Alliance Variant
Chr9:56985398 Sin3a Intron
Tssr85287 1703 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46763133
MGI SNP Detail
Alliance Variant
Chr9:56985474 Sin3a Intron
Tssr85287 1779 bp downstream
SNP G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225027219
MGI SNP Detail
Alliance Variant
Chr9:56985566 Sin3a Intron
Tssr85287 1871 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238683442
MGI SNP Detail
Alliance Variant
Chr9:56985569 Sin3a Intron
Tssr85287 1874 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
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Showing SNP(s) 1 - 52 of 52

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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