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Mouse SNP Summary
Symbol
Name
ID 		Tssr85310
transcription start site region 85310
MGI:6013077

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Showing SNP(s) 1 - 47 of 47

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245229403
MGI SNP Detail		 Chr9:57434285 Cox5a within coordinates of
Tssr85310 1944 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583967687
MGI SNP Detail		 Chr9:57434423 Cox5a within coordinates of
Tssr85310 1806 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215199205
MGI SNP Detail		 Chr9:57434457 Cox5a within coordinates of
Tssr85310 1772 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T T C C C C C C T C C C C C C C A C C C C
rs228685168
MGI SNP Detail		 Chr9:57434493 Cox5a within coordinates of
Tssr85310 1736 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G A A G G G G G G G G G G G G G G G G G G G
rs250016019
MGI SNP Detail		 Chr9:57434717 Cox5a within coordinates of
Tssr85310 1512 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218184095
MGI SNP Detail		 Chr9:57434774 Cox5a within coordinates of
Tssr85310 1455 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A A A A A A G A A A A
rs235382142
MGI SNP Detail		 Chr9:57434886 Cox5a within coordinates of
Tssr85310 1343 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251377486
MGI SNP Detail		 Chr9:57435298 Cox5a within coordinates of
Tssr85310 931 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216067028
MGI SNP Detail		 Chr9:57435398 Cox5a within coordinates of
Tssr85310 831 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C C A A A A A A C A A A A A A A C A A A A
rs233475713
MGI SNP Detail		 Chr9:57435502 Cox5a within coordinates of
Tssr85310 727 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261919119
MGI SNP Detail		 Chr9:57435518 Cox5a within coordinates of
Tssr85310 711 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223375784
MGI SNP Detail		 Chr9:57435519 Cox5a within coordinates of
Tssr85310 710 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243970706
MGI SNP Detail		 Chr9:57435530 Cox5a within coordinates of
Tssr85310 699 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs255987652
MGI SNP Detail		 Chr9:57435829 Cox5a within coordinates of
Tssr85310 400 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225758674
MGI SNP Detail		 Chr9:57435830 Cox5a within coordinates of
Tssr85310 399 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242579018
MGI SNP Detail		 Chr9:57435840 Cox5a within coordinates of
Tssr85310 389 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49656394
MGI SNP Detail		 Chr9:57435877 Cox5a within coordinates of
Tssr85310 352 bp upstream
 SNP A/G A A A G
rs46688869
MGI SNP Detail		 Chr9:57435890 Cox5a within coordinates of
Tssr85310 339 bp upstream
 SNP C/T C C C T
rs52478006
MGI SNP Detail		 Chr9:57435927 Cox5a within coordinates of
Tssr85310 302 bp upstream
 SNP A/G G G G A
rs265361624
MGI SNP Detail		 Chr9:57435983 Cox5a within coordinates of
Tssr85310 246 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A G G A A A A A A A A A A A A A A A A A A A
rs228216818
MGI SNP Detail		 Chr9:57436017 Cox5a within coordinates of
Tssr85310 212 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254654228
MGI SNP Detail		 Chr9:57436082 Cox5a within coordinates of
Tssr85310 147 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs264074947
MGI SNP Detail		 Chr9:57436155 Cox5a within coordinates of
Tssr85310 74 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229321536
MGI SNP Detail		 Chr9:57436161 Cox5a within coordinates of
Tssr85310 68 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245301415
MGI SNP Detail		 Chr9:57436216 Cox5a within coordinates of
Tssr85310 13 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs36563880
MGI SNP Detail		 Chr9:57436315 Cox5a within coordinates of
Tssr85310 77 bp downstream
 SNP C/T T T T T T T C T T T C C T C T T
rs231527687
MGI SNP Detail		 Chr9:57436371 Cox5a within coordinates of
Tssr85310 133 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250627875
MGI SNP Detail		 Chr9:57436573 Cox5a within coordinates of
Tssr85310 335 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30144853
MGI SNP Detail		 Chr9:57436669 Cox5a within coordinates of
Tssr85310 431 bp downstream
 SNP C/T T T T C T T T C C T T T C T C T
rs234683841
MGI SNP Detail		 Chr9:57436839 Cox5a within coordinates of
Tssr85310 601 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs47365546
MGI SNP Detail		 Chr9:57436868 Cox5a within coordinates of
Tssr85310 630 bp downstream
 SNP G/T G G T
rs222615709
MGI SNP Detail		 Chr9:57436948 Cox5a within coordinates of
Tssr85310 710 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs49045578
MGI SNP Detail		 Chr9:57437147 Cox5a within coordinates of
Tssr85310 909 bp downstream
 SNP C/T C C C T
rs49800828
MGI SNP Detail		 Chr9:57437148 Cox5a within coordinates of
Tssr85310 910 bp downstream
 SNP G/T T T T G
rs221633088
MGI SNP Detail		 Chr9:57437196 Cox5a within coordinates of
Tssr85310 958 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs36489189
MGI SNP Detail		 Chr9:57437217 Cox5a within coordinates of
Tssr85310 979 bp downstream
 SNP A/G A A A A G A A A A A A
rs262930443
MGI SNP Detail		 Chr9:57437240 Cox5a within coordinates of
Tssr85310 1002 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs36757658
MGI SNP Detail		 Chr9:57437380 Cox5a within coordinates of
Tssr85310 1142 bp downstream
 SNP C/T C C C C C C C T C C C T T C C C C
rs242472375
MGI SNP Detail		 Chr9:57437426 Cox5a within coordinates of
Tssr85310 1188 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs38303178
MGI SNP Detail		 Chr9:57437656 Cox5a within coordinates of
Tssr85310 1418 bp downstream
 SNP A/T A A A A A A T A A A A A A A A
rs39005720
MGI SNP Detail		 Chr9:57437762 Cox5a within coordinates of
Tssr85310 1524 bp downstream
 SNP A/G A A A A A G A A A G A A A A
rs245338204
MGI SNP Detail		 Chr9:57437872 Cox5a within coordinates of
Tssr85310 1634 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A A A A A A G A A A A
rs258177707
MGI SNP Detail		 Chr9:57437895 Cox5a within coordinates of
Tssr85310 1657 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586741676
MGI SNP Detail		 Chr9:57437957 Cox5a within coordinates of
Tssr85310 1719 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225533993
MGI SNP Detail		 Chr9:57438031 Cox5a within coordinates of
Tssr85310 1793 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579504993
MGI SNP Detail		 Chr9:57438056 Cox5a within coordinates of
Tssr85310 1818 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214655305
MGI SNP Detail		 Chr9:57438189 Cox5a within coordinates of
Tssr85310 1951 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 47 of 47
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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