About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr85606
transcription start site region 85606
MGI:6013373

<< first < prev1 next > last >>
Showing SNP(s) 1 - 74 of 74

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260639194
MGI SNP Detail
Chr9:64083868 Rpl4 within coordinates of
Tssr85606 1814 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225847160
MGI SNP Detail
Chr9:64083889 Rpl4 within coordinates of
Tssr85606 1793 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs235426808
MGI SNP Detail
Chr9:64083897 Rpl4 within coordinates of
Tssr85606 1785 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248178330
MGI SNP Detail
Chr9:64084000 Gm23136 within coordinates of
Rpl4 within coordinates of
Tssr85606 1682 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219941471
MGI SNP Detail
Chr9:64084070 Rpl4 within coordinates of
Tssr85606 1612 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T
rs237449459
MGI SNP Detail
Chr9:64084084 Rpl4 within coordinates of
Tssr85606 1598 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs258257860
MGI SNP Detail
Chr9:64084106 Rpl4 within coordinates of
Tssr85606 1576 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224376767
MGI SNP Detail
Chr9:64084154 Rpl4 within coordinates of
Tssr85606 1528 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs251675848
MGI SNP Detail
Chr9:64084392 Rpl4 within coordinates of
Tssr85606 1290 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs264053485
MGI SNP Detail
Chr9:64084499 Rpl4 within coordinates of
Tssr85606 1183 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs229365216
MGI SNP Detail
Chr9:64084646 Rpl4 within coordinates of
Tssr85606 1036 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243857287
MGI SNP Detail
Chr9:64084769 Rpl4 within coordinates of
Tssr85606 913 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258715288
MGI SNP Detail
Chr9:64084804 Rpl4 within coordinates of
Tssr85606 878 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226014248
MGI SNP Detail
Chr9:64084845 Rpl4 within coordinates of
Tssr85606 837 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G A G G G G G A G A G G G A A A G G G G G G A G G G G G A A G A A
rs247521908
MGI SNP Detail
Chr9:64084860 Rpl4 within coordinates of
Tssr85606 822 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs216846685
MGI SNP Detail
Chr9:64084995 Rpl4 within coordinates of
Tssr85603 within coordinates of
Tssr85606 687 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C T C C C C C C C T C C T T
rs50793796
MGI SNP Detail
Chr9:64085028 Rpl4 within coordinates of
Tssr85606 654 bp upstream
SNP A/G G A A A A A A A A A A A A A
rs259950704
MGI SNP Detail
Chr9:64085114 Rpl4 within coordinates of
Tssr85606 568 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs6172569
MGI SNP Detail
Chr9:64085122 Rpl4 within coordinates of
Tssr85606 560 bp upstream
SNP C/T C T
rs236883275
MGI SNP Detail
Chr9:64085257 Rpl4 within coordinates of
Tssr85606 425 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C T C C C C C C T C C C
rs248127040
MGI SNP Detail
Chr9:64085312 Rpl4 within coordinates of
Tssr85606 370 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214395372
MGI SNP Detail
Chr9:64085322 Rpl4 within coordinates of
Tssr85606 360 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231265501
MGI SNP Detail
Chr9:64085340 Rpl4 within coordinates of
Tssr85606 342 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A
rs584599302
MGI SNP Detail
Chr9:64085381 Rpl4 within coordinates of
Tssr85606 301 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586954963
MGI SNP Detail
Chr9:64085385 Rpl4 within coordinates of
Tssr85606 297 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251842675
MGI SNP Detail
Chr9:64085392 Rpl4 within coordinates of
Tssr85606 290 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224092677
MGI SNP Detail
Chr9:64085394 Rpl4 within coordinates of
Tssr85606 288 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248500913
MGI SNP Detail
Chr9:64085412 Rpl4 within coordinates of
Tssr85606 270 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs263863460
MGI SNP Detail
Chr9:64085415 Rpl4 within coordinates of
Tssr85606 267 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221616882
MGI SNP Detail
Chr9:64085585 Rpl4 within coordinates of
Tssr85605 within coordinates of
Tssr85606 97 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237279714
MGI SNP Detail
Chr9:64085606 Rpl4 within coordinates of
Tssr85605 within coordinates of
Tssr85606 76 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258651575
MGI SNP Detail
Chr9:64085699 Rpl4 within coordinates of
Tssr85606 1 bp downstream
Tssr90134 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T T T C T T T T T T T C T T C C
rs226152913
MGI SNP Detail
Chr9:64085767 Rpl4 within coordinates of
Tssr85606 69 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C A C C C C
rs241654579
MGI SNP Detail
Chr9:64085768 Rpl4 within coordinates of
Tssr85606 70 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263306039
MGI SNP Detail
Chr9:64085896 Rpl4 within coordinates of
Tssr85606 198 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235652808
MGI SNP Detail
Chr9:64086002 Tssr85606 304 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254470682
MGI SNP Detail
Chr9:64086041 Tssr85606 343 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217854838
MGI SNP Detail
Chr9:64086080 Tssr85606 382 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs223946050
MGI SNP Detail
Chr9:64086099 Tssr85606 401 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs242018984
MGI SNP Detail
Chr9:64086100 Tssr85606 402 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214130485
MGI SNP Detail
Chr9:64086115 Tssr85606 417 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs231386399
MGI SNP Detail
Chr9:64086147 Tssr85606 449 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263353952
MGI SNP Detail
Chr9:64086162 Tssr85606 464 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A T A T T A A A A T A T A A A T T T A A A A T A T A A A A A T T A T T
rs215498757
MGI SNP Detail
Chr9:64086172 Tssr85606 474 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C G G C C C C G C C C C C G C C C C C C G C C C C C C C G C C G G
rs33752562
MGI SNP Detail
Chr9:64086173 Tssr85606 475 bp downstream
SNP A/T T T T A
rs260381689
MGI SNP Detail
Chr9:64086185 Tssr85606 487 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221299143
MGI SNP Detail
Chr9:64086240 Tssr85606 542 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237222418
MGI SNP Detail
Chr9:64086252 Tssr85606 554 bp downstream
SNP C/G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G C G G G G
rs252117183
MGI SNP Detail
Chr9:64086268 Tssr85606 570 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219667501
MGI SNP Detail
Chr9:64086327 Tssr85606 629 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51241749
MGI SNP Detail
Chr9:64086345 Tssr85606 647 bp downstream
SNP C/G G G G G G G G G G G G C G G G
rs265611047
MGI SNP Detail
Chr9:64086426 Tssr85606 728 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234106850
MGI SNP Detail
Chr9:64086469 Cpgi21924 within coordinates of
Tssr85606 771 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250527682
MGI SNP Detail
Chr9:64086479 Cpgi21924 within coordinates of
Tssr85606 781 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs51937760
MGI SNP Detail
Chr9:64086499 Cpgi21924 within coordinates of
Tssr85606 801 bp downstream
SNP A/C C C C C C C C C C C C C C C A
rs224085015
MGI SNP Detail
Chr9:64086512 Cpgi21924 within coordinates of
Tssr85606 814 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242140489
MGI SNP Detail
Chr9:64086533 Cpgi21924 within coordinates of
Tssr85606 835 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs214071111
MGI SNP Detail
Chr9:64086555 Cpgi21924 within coordinates of
Rr368801 within coordinates of
Tssr85606 857 bp downstream
Tssr85607 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs224959403
MGI SNP Detail
Chr9:64086556 Cpgi21924 within coordinates of
Rr368801 within coordinates of
Snapc5 within coordinates of
Tssr85606 858 bp downstream
Tssr85607 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33700817
MGI SNP Detail
Chr9:64086592 Cpgi21924 within coordinates of
Rr368801 within coordinates of
Snapc5 within coordinates of
Tssr85606 894 bp downstream
Tssr85608 within coordinates of
SNP A/G G G G G G G G G A G A G G G G G
rs216161185
MGI SNP Detail
Chr9:64086612 Cpgi21924 within coordinates of
Rr368801 within coordinates of
Snapc5 within coordinates of
Tssr85606 914 bp downstream
Tssr85608 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G G G G C G G G G G G C G G G
rs240143648
MGI SNP Detail
Chr9:64086708 Cpgi21924 within coordinates of
Snapc5 within coordinates of
Tssr85606 1010 bp downstream
SNP A/C C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C C C A C C C C C C C C C C A C C C C C C C C C
rs50816403
MGI SNP Detail
Chr9:64086723 Cpgi21924 within coordinates of
Snapc5 within coordinates of
Tssr85606 1025 bp downstream
SNP C/G C C C C C C G C C C C C C C C
rs46581535
MGI SNP Detail
Chr9:64086772 Cpgi21924 within coordinates of
Snapc5 within coordinates of
Tssr85606 1074 bp downstream
SNP A/G G G G G G G A G G G A G G A
rs580836199
MGI SNP Detail
Chr9:64086780 Cpgi21924 within coordinates of
Snapc5 within coordinates of
Tssr85606 1082 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48916745
MGI SNP Detail
Chr9:64086922 Snapc5 within coordinates of
Tssr85606 1224 bp downstream
SNP A/G A A A A A A G A A A G G A A G
rs252257826
MGI SNP Detail
Chr9:64086940 Snapc5 within coordinates of
Tssr85606 1242 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219613855
MGI SNP Detail
Chr9:64087152 Snapc5 within coordinates of
Tssr85606 1454 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241202416
MGI SNP Detail
Chr9:64087155 Snapc5 within coordinates of
Tssr85606 1457 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A
rs584409798
MGI SNP Detail
Chr9:64087283 Snapc5 within coordinates of
Tssr85606 1585 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258979104
MGI SNP Detail
Chr9:64087398 Snapc5 within coordinates of
Tssr85606 1700 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227635698
MGI SNP Detail
Chr9:64087399 Snapc5 within coordinates of
Tssr85606 1701 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247739842
MGI SNP Detail
Chr9:64087630 Snapc5 within coordinates of
Tssr85606 1932 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs264929760
MGI SNP Detail
Chr9:64087665 Snapc5 within coordinates of
Tssr85606 1967 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory