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Mouse SNP Summary
Symbol
Name
ID 		Tssr85840
transcription start site region 85840
MGI:6013607

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Showing SNP(s) 1 - 59 of 59

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs16817575
MGI SNP Detail
Alliance Variant		 Chr9:69195196 Rora Intron
Tssr85840 1927 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G A G G A A A G G G G
rs47667356
MGI SNP Detail
Alliance Variant		 Chr9:69195250 Rora Intron
Tssr85840 1873 bp upstream
 SNP G G G G
rs258993351
MGI SNP Detail
Alliance Variant		 Chr9:69195359 Rora Intron
Rora mRNA-UTR
Tssr85840 1764 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212575667
MGI SNP Detail
Alliance Variant		 Chr9:69195395 Rora Intron
Rora mRNA-UTR
Tssr85840 1728 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235951199
MGI SNP Detail
Alliance Variant		 Chr9:69195433 Rora Intron
Rora mRNA-UTR
Tssr85840 1690 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257554814
MGI SNP Detail
Alliance Variant		 Chr9:69195434 Rora Intron
Rora mRNA-UTR
Tssr85840 1689 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213302067
MGI SNP Detail
Alliance Variant		 Chr9:69195473 Rora Intron
Rora mRNA-UTR
Tssr85840 1650 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A A A G A G G G G G G G A G G G G
rs585754929
MGI SNP Detail
Alliance Variant		 Chr9:69195479 Rora Intron
Rora mRNA-UTR
Tssr85840 1644 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234754362
MGI SNP Detail
Alliance Variant		 Chr9:69195490 Rora Intron
Rora mRNA-UTR
Tssr85840 1633 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C A A A C A C C C C C C C A C C C C
rs16817592
MGI SNP Detail
Alliance Variant		 Chr9:69195496 Rora Intron
Rora mRNA-UTR
Tssr85840 1627 bp upstream
 SNP A/G G G G G G G G G G G A G G G G A G A A A G G
rs16817593
MGI SNP Detail
Alliance Variant		 Chr9:69195497 Rora Intron
Rora mRNA-UTR
Tssr85840 1626 bp upstream
 SNP C/T T T T T T T T T T T C T T T T C T C C C T T
rs247275600
MGI SNP Detail
Alliance Variant		 Chr9:69195533 Rora Intron
Rora mRNA-UTR
Tssr85840 1590 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263864345
MGI SNP Detail
Alliance Variant		 Chr9:69195554 Rora Intron
Rora mRNA-UTR
Tssr85840 1569 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221848345
MGI SNP Detail
Alliance Variant		 Chr9:69195557 Rora Intron
Rora mRNA-UTR
Tssr85840 1566 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C
rs244197439
MGI SNP Detail
Alliance Variant		 Chr9:69195570 Rora Intron
Rora mRNA-UTR
Tssr85840 1553 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs16817594
MGI SNP Detail
Alliance Variant		 Chr9:69195696 Rora Intron
Rora mRNA-UTR
Tssr85840 1427 bp upstream
 SNP C/G C C C C C C C C C C C G C C C C C C C C C C C C C C C
rs225325077
MGI SNP Detail
Alliance Variant		 Chr9:69195734 Rora Intron
Tssr85840 1389 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46632174
MGI SNP Detail
Alliance Variant		 Chr9:69195914 Rora Intron
Tssr85840 1209 bp upstream
 SNP A/C C C A C C A C
rs265956890
MGI SNP Detail
Alliance Variant		 Chr9:69195939 Rora Intron
Tssr85840 1184 bp upstream
 SNP A/G G A
rs229498092
MGI SNP Detail
Alliance Variant		 Chr9:69195966 Rora Intron
Tssr85840 1157 bp upstream
 SNP C/T C C C C T T C C C C C C T T C C T T C T C C T C C C C T C C C T T C T T T T T C C T C C C C T T C T T
rs254206011
MGI SNP Detail
Alliance Variant		 Chr9:69195995 Rora Intron
Tssr85840 1128 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs16817599
MGI SNP Detail
Alliance Variant		 Chr9:69196079 Rora Intron
Tssr85840 1044 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C G
rs227419354
MGI SNP Detail
Alliance Variant		 Chr9:69196087 Rora Intron
Tssr85840 1036 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs16817598
MGI SNP Detail
Alliance Variant		 Chr9:69196246 Rora Intron
Tssr85840 877 bp upstream
 SNP G/T T T T G G T T T T T G T T G T G G G G G T G T G
rs16817597
MGI SNP Detail
Alliance Variant		 Chr9:69196252 Rora Intron
Tssr85840 871 bp upstream
 SNP C/T C C C C C C C C C T C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs16817596
MGI SNP Detail
Alliance Variant		 Chr9:69196344 Rora Intron
Rora mRNA-UTR
Tssr85840 779 bp upstream
 SNP A/G A A A G G A A A A G A G A G G G G G A A A
rs16817595
MGI SNP Detail
Alliance Variant		 Chr9:69196425 Rora Intron
Rora mRNA-UTR
Tssr85840 698 bp upstream
 SNP C/G C C C G G C C C C C C C G C C G C C C C C G C
rs50934578
MGI SNP Detail
Alliance Variant		 Chr9:69196626 Cpgi21987 within coordinates of
Rora Coding-NonSynonymous
Rora Intron
Rr682144 within coordinates of
Tssr85840 497 bp upstream
 SNP A/G G G G A G G G
rs16817605
MGI SNP Detail
Alliance Variant		 Chr9:69196675 Cpgi21987 within coordinates of
Rora Intron
Rr682144 within coordinates of
Tssr85840 448 bp upstream
 SNP G/T G G G G G G G T G T G T T T G G T
rs16817604
MGI SNP Detail
Alliance Variant		 Chr9:69196769 Cpgi21987 within coordinates of
Rora Intron
Rr682144 within coordinates of
Tssr85840 354 bp upstream
 SNP C/G C C C C C C C C G C C G C G G G C C G
rs16817601
MGI SNP Detail
Alliance Variant		 Chr9:69196819 Cpgi21987 within coordinates of
Rora Intron
Rr682144 within coordinates of
Tssr85840 304 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A G
rs16817600
MGI SNP Detail
Alliance Variant		 Chr9:69196846 Cpgi21987 within coordinates of
Rora Intron
Rr682144 within coordinates of
Tssr85840 277 bp upstream
 SNP C/T T T T T T T T T C T C T C C C T T C
rs219891556
MGI SNP Detail
Alliance Variant		 Chr9:69196915 Cpgi21987 within coordinates of
Rora Intron
Rr682144 within coordinates of
Tssr85840 208 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241429820
MGI SNP Detail
Alliance Variant		 Chr9:69196962 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682144 within coordinates of
Tssr85840 161 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs6272923
MGI SNP Detail
Alliance Variant		 Chr9:69196978 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 145 bp upstream
 SNP G/T G T
rs6285663
MGI SNP Detail
Alliance Variant		 Chr9:69197014 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 109 bp upstream
 SNP C/T C C C C C C C C C T C C T C T T T C C C
rs219475094
MGI SNP Detail
Alliance Variant		 Chr9:69197351 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 220 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs6287372
MGI SNP Detail
Alliance Variant		 Chr9:69197371 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 240 bp downstream
 SNP C/G G C
rs225124501
MGI SNP Detail
Alliance Variant		 Chr9:69197444 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 313 bp downstream
 SNP A/G G A
rs257281072
MGI SNP Detail
Alliance Variant		 Chr9:69197490 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 359 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs6288356
MGI SNP Detail
Alliance Variant		 Chr9:69197504 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 373 bp downstream
 SNP C/T T C
rs250573203
MGI SNP Detail
Alliance Variant		 Chr9:69197661 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 530 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs580540949
MGI SNP Detail
Alliance Variant		 Chr9:69197739 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 608 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs251331729
MGI SNP Detail
Alliance Variant		 Chr9:69198046 Cpgi21987 within coordinates of
Rora Intron
Rora mRNA-UTR
Rr682145 within coordinates of
Tssr85840 915 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G G G A G A A A A A A A A A A A
rs51595692
MGI SNP Detail
Alliance Variant		 Chr9:69198238 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1107 bp downstream
 SNP A/G G G G A G G A G
rs46725808
MGI SNP Detail
Alliance Variant		 Chr9:69198290 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1159 bp downstream
 SNP A/G G G G G A G A G G
rs246181344
MGI SNP Detail
Alliance Variant		 Chr9:69198404 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1273 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A
rs217068657
MGI SNP Detail
Alliance Variant		 Chr9:69198476 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1345 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G
rs50360711
MGI SNP Detail
Alliance Variant		 Chr9:69198485 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1354 bp downstream
 SNP A/G G G G G A G G G
rs254098953
MGI SNP Detail
Alliance Variant		 Chr9:69198536 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1405 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
MSM
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211980622
MGI SNP Detail
Alliance Variant		 Chr9:69198553 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1422 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A A A G A G G G G G G G G G G G G
rs238912052
MGI SNP Detail
Alliance Variant		 Chr9:69198592 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1461 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G C C C G G G G G G G G G G G G G G
rs250682587
MGI SNP Detail
Alliance Variant		 Chr9:69198665 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1534 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C G C C G G G C G C C C C C C C C C C C C
rs219532872
MGI SNP Detail
Alliance Variant		 Chr9:69198718 Cpgi21987 within coordinates of
Rora Intron
Rr682145 within coordinates of
Tssr85840 1587 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G
rs233696803
MGI SNP Detail
Alliance Variant		 Chr9:69198812 Rora Intron
Rr682145 within coordinates of
Tssr85840 1681 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G
rs251306140
MGI SNP Detail
Alliance Variant		 Chr9:69198883 Rora Intron
Rr682145 within coordinates of
Tssr85840 1752 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T T T G T G G G G G G G G G G G G
rs227190779
MGI SNP Detail
Alliance Variant		 Chr9:69198890 Rora Intron
Rr682145 within coordinates of
Tssr85840 1759 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G T T T G T G G G G G G G G G G G G
rs247998760
MGI SNP Detail
Alliance Variant		 Chr9:69199015 Rora Intron
Rr682145 within coordinates of
Tssr85840 1884 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264956576
MGI SNP Detail
Alliance Variant		 Chr9:69199096 Rora Intron
Rr682145 within coordinates of
Tssr85840 1965 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 59 of 59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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