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Mouse SNP Summary
Symbol
Name
ID
Tssr85856
transcription start site region 85856
MGI:6013623

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583043498
MGI SNP Detail
Chr9:69309126 Ice2 within coordinates of
Tssr85856 1993 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs587568503
MGI SNP Detail
Chr9:69309135 Ice2 within coordinates of
Tssr85856 1984 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs580685381
MGI SNP Detail
Chr9:69309139 Ice2 within coordinates of
Tssr85856 1980 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs578684943
MGI SNP Detail
Chr9:69309145 Ice2 within coordinates of
Tssr85856 1974 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs50078680
MGI SNP Detail
Chr9:69309202 Ice2 within coordinates of
Tssr85856 1917 bp upstream
SNP A/C A C A C A C C C C A A C C A A
rs251313057
MGI SNP Detail
Chr9:69309257 Ice2 within coordinates of
Tssr85856 1862 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs45937306
MGI SNP Detail
Chr9:69309341 Ice2 within coordinates of
Tssr85856 1778 bp upstream
SNP C/T C C C C C C T C C C C C C C
rs234775090
MGI SNP Detail
Chr9:69309351 Ice2 within coordinates of
Tssr85856 1768 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs48558870
MGI SNP Detail
Chr9:69309455 Ice2 within coordinates of
Tssr85856 1664 bp upstream
SNP A/G A A A A A A G A A A G A A A A
rs582199774
MGI SNP Detail
Chr9:69309525 Ice2 within coordinates of
Tssr85856 1594 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs584552771
MGI SNP Detail
Chr9:69309602 Ice2 within coordinates of
Tssr85856 1517 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs30234367
MGI SNP Detail
Chr9:69309618 Ice2 within coordinates of
Tssr85856 1501 bp upstream
SNP C/T T C C T T
rs578861117
MGI SNP Detail
Chr9:69309660 Ice2 within coordinates of
Tssr85856 1459 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs586297428
MGI SNP Detail
Chr9:69309672 Ice2 within coordinates of
Tssr85856 1447 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586304279
MGI SNP Detail
Chr9:69309691 Ice2 within coordinates of
Tssr85856 1428 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236829373
MGI SNP Detail
Chr9:69309707 Ice2 within coordinates of
Tssr85856 1412 bp upstream
SNP G/T T G
rs580614967
MGI SNP Detail
Chr9:69309709 Ice2 within coordinates of
Tssr85856 1410 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581947053
MGI SNP Detail
Chr9:69309739 Ice2 within coordinates of
Tssr85856 1380 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs585607798
MGI SNP Detail
Chr9:69309744 Ice2 within coordinates of
Tssr85856 1375 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579827848
MGI SNP Detail
Chr9:69309747 Ice2 within coordinates of
Tssr85856 1372 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs583063479
MGI SNP Detail
Chr9:69309757 Ice2 within coordinates of
Tssr85856 1362 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs586966784
MGI SNP Detail
Chr9:69309768 Ice2 within coordinates of
Tssr85856 1351 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580469370
MGI SNP Detail
Chr9:69309786 Ice2 within coordinates of
Tssr85856 1333 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583829744
MGI SNP Detail
Chr9:69309795 Ice2 within coordinates of
Tssr85856 1324 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs587525840
MGI SNP Detail
Chr9:69309806 Ice2 within coordinates of
Tssr85856 1313 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581781546
MGI SNP Detail
Chr9:69309839 Ice2 within coordinates of
Tssr85856 1280 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs586125351
MGI SNP Detail
Chr9:69309990 Ice2 within coordinates of
Tssr85856 1129 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583682578
MGI SNP Detail
Chr9:69309993 Ice2 within coordinates of
Tssr85856 1126 bp upstream
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584226217
MGI SNP Detail
Chr9:69310031 Ice2 within coordinates of
Tssr85856 1088 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C
rs578793470
MGI SNP Detail
Chr9:69310153 Ice2 within coordinates of
Tssr85856 966 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G
rs582511220
MGI SNP Detail
Chr9:69310202 Ice2 within coordinates of
Tssr85856 917 bp upstream
SNP C/G C C C G C C G G C G G G C C G G C C G G G G G G G C C C C G C G G C C C C G G C G G G C C G C C
rs220480030
MGI SNP Detail
Chr9:69310655 Ice2 within coordinates of
Tssr85856 464 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244473430
MGI SNP Detail
Chr9:69310660 Ice2 within coordinates of
Tssr85856 459 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T C C C T T T T T T T T T T T T T T
rs262132219
MGI SNP Detail
Chr9:69310661 Ice2 within coordinates of
Tssr85856 458 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221608412
MGI SNP Detail
Chr9:69310665 Ice2 within coordinates of
Tssr85856 454 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240265457
MGI SNP Detail
Chr9:69310679 Ice2 within coordinates of
Tssr85856 440 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs261041689
MGI SNP Detail
Chr9:69310759 Ice2 within coordinates of
Tssr85856 360 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T
rs228355158
MGI SNP Detail
Chr9:69310764 Ice2 within coordinates of
Tssr85856 355 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A
rs48783649
MGI SNP Detail
Chr9:69310822 Ice2 within coordinates of
Tssr85856 297 bp upstream
SNP A/T T T T T T T T T T T T T A T T
rs245060149
MGI SNP Detail
Chr9:69310891 Ice2 within coordinates of
Tssr85856 228 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs261490481
MGI SNP Detail
Chr9:69310903 Ice2 within coordinates of
Tssr85856 216 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C T T T C C C C C C C C C C C C C C
rs231083468
MGI SNP Detail
Chr9:69310917 Ice2 within coordinates of
Tssr85856 202 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs250605831
MGI SNP Detail
Chr9:69310929 Ice2 within coordinates of
Tssr85856 190 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47476183
MGI SNP Detail
Chr9:69311008 Ice2 within coordinates of
Tssr85856 111 bp upstream
SNP C/T T T T T T T T T T T T T C T T
rs579417264
MGI SNP Detail
Chr9:69311119 Ice2 within coordinates of
Tssr85856 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs48784860
MGI SNP Detail
Chr9:69311152 Ice2 within coordinates of
Tssr85856 30 bp downstream
SNP C/T C T C T C T T T T C C T T C C C C
rs51666808
MGI SNP Detail
Chr9:69311154 Ice2 within coordinates of
Tssr85856 32 bp downstream
SNP A/T A A A A A T A A A A A
rs245404367
MGI SNP Detail
Chr9:69311319 Ice2 within coordinates of
Tssr85856 197 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50402206
MGI SNP Detail
Chr9:69311386 Ice2 within coordinates of
Tssr85856 264 bp downstream
SNP A/G G G G G G G G G G G A G G G G
rs239554735
MGI SNP Detail
Chr9:69311455 Ice2 within coordinates of
Tssr85856 333 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261582162
MGI SNP Detail
Chr9:69311472 Ice2 within coordinates of
Tssr85856 350 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212400374
MGI SNP Detail
Chr9:69311526 Ice2 within coordinates of
Tssr85856 404 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs239405161
MGI SNP Detail
Chr9:69311539 Ice2 within coordinates of
Tssr85856 417 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs257368915
MGI SNP Detail
Chr9:69311541 Ice2 within coordinates of
Tssr85856 419 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs222126547
MGI SNP Detail
Chr9:69311630 Ice2 within coordinates of
Tssr85856 508 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A
rs240327941
MGI SNP Detail
Chr9:69311669 Ice2 within coordinates of
Tssr85856 547 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255033005
MGI SNP Detail
Chr9:69311679 Ice2 within coordinates of
Tssr85856 557 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47436171
MGI SNP Detail
Chr9:69311702 Ice2 within coordinates of
Tssr85856 580 bp downstream
SNP A/G G G G G G G G G G G A G G G
rs241789685
MGI SNP Detail
Chr9:69311932 Ice2 within coordinates of
Tssr85856 810 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs48003043
MGI SNP Detail
Chr9:69311961 Ice2 within coordinates of
Tssr85856 839 bp downstream
SNP A/G A A A A A A G A A A A A A A A
rs230886901
MGI SNP Detail
Chr9:69311975 Ice2 within coordinates of
Tssr85856 853 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs30141645
MGI SNP Detail
Chr9:69312360 Ice2 within coordinates of
Tssr85856 1238 bp downstream
SNP C/T T T C T C T C C C C C T T C C T T
rs257989325
MGI SNP Detail
Chr9:69312439 Ice2 within coordinates of
Tssr85856 1317 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs226722427
MGI SNP Detail
Chr9:69312527 Ice2 within coordinates of
Tssr85856 1405 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs245460069
MGI SNP Detail
Chr9:69312573 Ice2 within coordinates of
Tssr85856 1451 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217446725
MGI SNP Detail
Chr9:69312592 Ice2 within coordinates of
Tssr85856 1470 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234230567
MGI SNP Detail
Chr9:69312635 Ice2 within coordinates of
Tssr85856 1513 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A A
rs33736432
MGI SNP Detail
Chr9:69312639 Ice2 within coordinates of
Tssr85856 1517 bp downstream
SNP C/T T C C C T T
rs212296093
MGI SNP Detail
Chr9:69312650 Ice2 within coordinates of
Tssr85856 1528 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46377757
MGI SNP Detail
Chr9:69312789 Ice2 within coordinates of
Tssr85856 1667 bp downstream
SNP A/C C C C C C C A C C C C C C C C
rs251537909
MGI SNP Detail
Chr9:69312854 Ice2 within coordinates of
Tssr85856 1732 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49487327
MGI SNP Detail
Chr9:69312872 Ice2 within coordinates of
Tssr85856 1750 bp downstream
SNP A/G A A A A A A G A A A G A A A
rs50175058
MGI SNP Detail
Chr9:69312937 Ice2 within coordinates of
Tssr85856 1815 bp downstream
SNP C/T C T C T C T C T T C C C T C C C
rs255477621
MGI SNP Detail
Chr9:69312939 Ice2 within coordinates of
Tssr85856 1817 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T G G G T G T T T T T T T G T T T T
rs225554433
MGI SNP Detail
Chr9:69312979 Ice2 within coordinates of
Tssr85856 1857 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 75 of 75

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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