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Mouse SNP Summary
Symbol
Name
ID 		Tssr85980
transcription start site region 85980
MGI:6013747

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224426972
MGI SNP Detail		 Chr9:72263119 Gm37303 within coordinates of
Tssr85980 1937 bp upstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33745342
MGI SNP Detail		 Chr9:72263126 Gm37303 within coordinates of
Tssr85980 1930 bp upstream
Zfp280d within coordinates of
 SNP A/G G G A G A G
rs36305017
MGI SNP Detail		 Chr9:72263239 Gm37303 within coordinates of
Tssr85980 1817 bp upstream
Zfp280d within coordinates of
 SNP C/T T T T C C T T
rs231122231
MGI SNP Detail		 Chr9:72263278 Gm37303 within coordinates of
Tssr85980 1778 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257764344
MGI SNP Detail		 Chr9:72263362 Gm37303 within coordinates of
Tssr85980 1694 bp upstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217209453
MGI SNP Detail		 Chr9:72263397 Gm37303 within coordinates of
Tssr85980 1659 bp upstream
Zfp280d within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs234729711
MGI SNP Detail		 Chr9:72263506 Gm37303 within coordinates of
Tssr85980 1550 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36316577
MGI SNP Detail		 Chr9:72263557 Gm37303 within coordinates of
Tssr85980 1499 bp upstream
Zfp280d within coordinates of
 SNP C/G C G C
rs217092585
MGI SNP Detail		 Chr9:72263574 Gm37303 within coordinates of
Tssr85980 1482 bp upstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37822218
MGI SNP Detail		 Chr9:72263652 Gm37303 within coordinates of
Tssr85980 1404 bp upstream
Zfp280d within coordinates of
 SNP A/G G A A G G
rs256003804
MGI SNP Detail		 Chr9:72263662 Gm37303 within coordinates of
Tssr85980 1394 bp upstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs221986047
MGI SNP Detail		 Chr9:72263687 Gm37303 within coordinates of
Tssr85980 1369 bp upstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243931352
MGI SNP Detail		 Chr9:72263707 Gm37303 within coordinates of
Tssr85980 1349 bp upstream
Zfp280d within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262822700
MGI SNP Detail		 Chr9:72263753 Gm37303 within coordinates of
Tssr85980 1303 bp upstream
Zfp280d within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs37000291
MGI SNP Detail		 Chr9:72263835 Gm37303 within coordinates of
Tssr85980 1221 bp upstream
Zfp280d within coordinates of
 SNP A/G G G A G G
rs241976174
MGI SNP Detail		 Chr9:72263889 Gm37303 within coordinates of
Tssr85980 1167 bp upstream
Zfp280d within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs261361406
MGI SNP Detail		 Chr9:72263902 Gm37303 within coordinates of
Tssr85980 1154 bp upstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224250107
MGI SNP Detail		 Chr9:72263940 Tssr85980 1116 bp upstream
Zfp280d within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
rs36492318
MGI SNP Detail		 Chr9:72264033 Tssr85980 1023 bp upstream
Zfp280d within coordinates of
 SNP A/C A A C C A A
rs262445601
MGI SNP Detail		 Chr9:72264067 Tssr85980 989 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs37161235
MGI SNP Detail		 Chr9:72264105 Tssr85980 951 bp upstream
Zfp280d within coordinates of
 SNP C/G C C G G C C C
rs252620516
MGI SNP Detail		 Chr9:72264111 Tssr85980 945 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36570477
MGI SNP Detail		 Chr9:72264156 Tssr85980 900 bp upstream
Zfp280d within coordinates of
 SNP C/G C C G G C C C
rs228887061
MGI SNP Detail		 Chr9:72264324 Tssr85980 732 bp upstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247782732
MGI SNP Detail		 Chr9:72264328 Tssr85980 728 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs39581736
MGI SNP Detail		 Chr9:72264382 Tssr85980 674 bp upstream
Zfp280d within coordinates of
 SNP A/G A A G A A
rs37857476
MGI SNP Detail		 Chr9:72264422 Tssr85980 634 bp upstream
Zfp280d within coordinates of
 SNP A/G A A G G A A
rs585251037
MGI SNP Detail		 Chr9:72264461 Tssr85980 595 bp upstream
Zfp280d within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs39332253
MGI SNP Detail		 Chr9:72264507 Tssr85980 549 bp upstream
Zfp280d within coordinates of
 SNP C/T C C C T C C C
rs213526398
MGI SNP Detail		 Chr9:72264514 Gm37581 within coordinates of
Tssr85980 542 bp upstream
Zfp280d within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs238796127
MGI SNP Detail		 Chr9:72264545 Gm37581 within coordinates of
Tssr85980 511 bp upstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs258572829
MGI SNP Detail		 Chr9:72264555 Gm37581 within coordinates of
Tssr85980 501 bp upstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs221685019
MGI SNP Detail		 Chr9:72264569 Gm37581 within coordinates of
Tssr85980 487 bp upstream
Zfp280d within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs241987385
MGI SNP Detail		 Chr9:72264580 Gm37581 within coordinates of
Tssr85980 476 bp upstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs255196079
MGI SNP Detail		 Chr9:72264622 Gm37581 within coordinates of
Tssr85980 434 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218237674
MGI SNP Detail		 Chr9:72264628 Gm37581 within coordinates of
Tssr85980 428 bp upstream
Zfp280d within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238102435
MGI SNP Detail		 Chr9:72264631 Gm37581 within coordinates of
Tssr85980 425 bp upstream
Zfp280d within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265087215
MGI SNP Detail		 Chr9:72264711 Gm37581 within coordinates of
Tssr85980 345 bp upstream
Zfp280d within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231099278
MGI SNP Detail		 Chr9:72264788 Gm37581 within coordinates of
Tssr85980 268 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248004661
MGI SNP Detail		 Chr9:72264811 Gm37581 within coordinates of
Tssr85980 245 bp upstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263791573
MGI SNP Detail		 Chr9:72264815 Gm37581 within coordinates of
Tssr85980 241 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A G
rs228710956
MGI SNP Detail		 Chr9:72264846 Gm37581 within coordinates of
Tssr85980 210 bp upstream
Zfp280d within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247806014
MGI SNP Detail		 Chr9:72264873 Gm37581 within coordinates of
Tssr85980 183 bp upstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254215371
MGI SNP Detail		 Chr9:72264954 Gm37581 within coordinates of
Tssr85980 102 bp upstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213813446
MGI SNP Detail		 Chr9:72265146 Gm37581 within coordinates of
Tssr85980 86 bp downstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs236813132
MGI SNP Detail		 Chr9:72265162 Gm37581 within coordinates of
Tssr85980 102 bp downstream
Zfp280d within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs256925855
MGI SNP Detail		 Chr9:72265192 Gm37581 within coordinates of
Tssr85980 132 bp downstream
Zfp280d within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215796976
MGI SNP Detail		 Chr9:72265234 Gm37581 within coordinates of
Tssr85980 174 bp downstream
Zfp280d within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs37830277
MGI SNP Detail		 Chr9:72265265 Gm37581 within coordinates of
Tssr85980 205 bp downstream
Zfp280d within coordinates of
 SNP A/G A A A A G A A G A A A A
rs255257428
MGI SNP Detail		 Chr9:72265304 Gm37581 within coordinates of
Tssr85980 244 bp downstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218166779
MGI SNP Detail		 Chr9:72265322 Gm37581 within coordinates of
Tssr85980 262 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237217111
MGI SNP Detail		 Chr9:72265406 Gm37581 within coordinates of
Tssr85980 346 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257200972
MGI SNP Detail		 Chr9:72265461 Gm37581 within coordinates of
Tssr85980 401 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223214677
MGI SNP Detail		 Chr9:72265613 Tssr85980 553 bp downstream
Zfp280d within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs245510955
MGI SNP Detail		 Chr9:72265688 Tssr85980 628 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30036397
MGI SNP Detail		 Chr9:72265730 Tssr85980 670 bp downstream
Zfp280d within coordinates of
 SNP A/G A A G G A G G G G G G G G G
rs222198856
MGI SNP Detail		 Chr9:72265736 Tssr85980 676 bp downstream
Zfp280d within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579217833
MGI SNP Detail		 Chr9:72265782 Tssr85980 722 bp downstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241848080
MGI SNP Detail		 Chr9:72265815 Tssr85980 755 bp downstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254129941
MGI SNP Detail		 Chr9:72265902 Tssr85980 842 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224864919
MGI SNP Detail		 Chr9:72265930 Tssr85980 870 bp downstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255719966
MGI SNP Detail		 Chr9:72266021 Tssr85980 961 bp downstream
Zfp280d within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs37184659
MGI SNP Detail		 Chr9:72266050 Tssr85980 990 bp downstream
Zfp280d within coordinates of
 SNP A/T T T T T T T T T T T T T T A T
rs230727060
MGI SNP Detail		 Chr9:72266058 Tssr85980 998 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252076159
MGI SNP Detail		 Chr9:72266092 Tssr85980 1032 bp downstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36934026
MGI SNP Detail		 Chr9:72266275 Tssr85980 1215 bp downstream
Zfp280d within coordinates of
 SNP C/G C G C C C G
rs215662509
MGI SNP Detail		 Chr9:72266311 Tssr85980 1251 bp downstream
Zfp280d within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T T A T T T T T T T T T T T T
rs37026748
MGI SNP Detail		 Chr9:72266707 Tssr85980 1647 bp downstream
Zfp280d within coordinates of
 SNP A/G G G G G G G G G G G G G A G
rs248707926
MGI SNP Detail		 Chr9:72266814 Tssr85980 1754 bp downstream
Zfp280d within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36794964
MGI SNP Detail		 Chr9:72266845 Tssr85980 1785 bp downstream
Zfp280d within coordinates of
 SNP C/T C C C C C T C C C T C C C C
rs37538341
MGI SNP Detail		 Chr9:72266878 Tssr85980 1818 bp downstream
Zfp280d within coordinates of
 SNP C/T T T T T T C T T T C T T T T
rs261979855
MGI SNP Detail		 Chr9:72266940 Tssr85980 1880 bp downstream
Zfp280d within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223510876
MGI SNP Detail		 Chr9:72267035 Tssr85980 1975 bp downstream
Zfp280d within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory