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Mouse SNP Summary
Symbol
Name
ID 		Tssr86422
transcription start site region 86422
MGI:6014189

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Showing SNP(s) 1 - 37 of 37

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580303924
MGI SNP Detail		 Chr9:88947161 Gm68594 within coordinates of
Tssr86422 1939 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582869647
MGI SNP Detail		 Chr9:88947195 Gm68594 within coordinates of
Tssr86422 1905 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586118074
MGI SNP Detail		 Chr9:88947205 Gm68594 within coordinates of
Tssr86422 1895 bp upstream
 SNP C/G G G G G G C G G G G G C C C C G G G C C G C C C C G C G C G C C G C C C C C C G G C C C C G C C C C
rs580306517
MGI SNP Detail		 Chr9:88947218 Gm68594 within coordinates of
Tssr86422 1882 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583460161
MGI SNP Detail		 Chr9:88947315 Gm68594 within coordinates of
Tssr86422 1785 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs107651259
MGI SNP Detail		 Chr9:88947359 Gm68594 within coordinates of
Tssr86422 1741 bp upstream
 SNP C C
rs586924517
MGI SNP Detail		 Chr9:88947477 Gm68594 within coordinates of
Tssr86422 1623 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs108176186
MGI SNP Detail		 Chr9:88947522 Gm68594 within coordinates of
Tssr86422 1578 bp upstream
 SNP G G
rs579869400
MGI SNP Detail		 Chr9:88947558 Gm68594 within coordinates of
Tssr86422 1542 bp upstream
 SNP G/T T T G T T T T T T T T T T T T T T T T T T T T T T G T T G
rs582820191
MGI SNP Detail		 Chr9:88947565 Gm68594 within coordinates of
Tssr86422 1535 bp upstream
 SNP A/G G A A A A A G A G A A A A A A G A A A G A A G A G A G
rs586725120
MGI SNP Detail		 Chr9:88947579 Gm68594 within coordinates of
Tssr86422 1521 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581459446
MGI SNP Detail		 Chr9:88948225 Gm68594 within coordinates of
Tssr86422 875 bp upstream
 SNP A/C A A A C A A A A A C C C C A A A C C A C C C C A C C C A C C A C C C C C C A A C C C C A C C C C C
rs585337859
MGI SNP Detail		 Chr9:88948301 Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 799 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C G C C
rs587203347
MGI SNP Detail		 Chr9:88948395 Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 705 bp upstream
 SNP A/G A A A G A A A A A G G G G A A A G G A G G G G A G G G A G G A G G G G G G A A G G G G A G G G G G
rs581261060
MGI SNP Detail		 Chr9:88948445 Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 655 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A
rs584945635
MGI SNP Detail		 Chr9:88948599 Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 501 bp upstream
 SNP C/T T T T C T T T T T C C C C T T T C C T C C C C T C C C T C C T C C C C C C T T C C C C T C C C C C
rs232304447
MGI SNP Detail		 Chr9:88948710 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 390 bp upstream
 SNP A/G G A
rs578573468
MGI SNP Detail		 Chr9:88948752 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684355 within coordinates of
Tssr86422 348 bp upstream
 SNP A/C C C C C A C C C C C A A A A C C C C A C C A A A C C C A C A A C C C A A A C C C A A C A C A C A A
rs582253829
MGI SNP Detail		 Chr9:88948786 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 314 bp upstream
 SNP C/G G G G C G G G C G G G G G C G G G G G G G G G G G G G C G G G G G G C C G G G G C G G G G
rs583991164
MGI SNP Detail		 Chr9:88948791 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 309 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T
rs578535192
MGI SNP Detail		 Chr9:88948809 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 291 bp upstream
 SNP A/G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G G G G G G G
rs582616785
MGI SNP Detail		 Chr9:88948819 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 281 bp upstream
 SNP A/G G A G G G A A A A A A A A A A A A A G A A A A G G A A A G A A
rs251101285
MGI SNP Detail		 Chr9:88948845 Cpgi22121 within coordinates of
Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 255 bp upstream
 SNP A/G G A G A A A A G A G A A A G G A A A G G G A A A G G G A A G A G A A
rs108089836
MGI SNP Detail		 Chr9:88948867 Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 233 bp upstream
 SNP C/T C T
rs580486018
MGI SNP Detail		 Chr9:88948871 Gm68594 within coordinates of
Rr684356 within coordinates of
Tssr86422 229 bp upstream
 SNP A/C A A A A A A A A A A A A C A A A A A A A A A A A A A A A C A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582441643
MGI SNP Detail		 Chr9:88949001 Rr684357 within coordinates of
Tssr86422 99 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs579746937
MGI SNP Detail		 Chr9:88949012 Rr684357 within coordinates of
Tssr86422 88 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583476068
MGI SNP Detail		 Chr9:88949030 Rr684357 within coordinates of
Tssr86422 70 bp upstream
 SNP C/T C C C C T C C C C C T T T T C C C T T C T T T T C T T C T T C T T T T T T C C T T T T C T T T T T
rs585121077
MGI SNP Detail		 Chr9:88949035 Rr684357 within coordinates of
Tssr86422 65 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257247624
MGI SNP Detail		 Chr9:88949061 Rr684358 within coordinates of
Tssr86422 39 bp upstream
 SNP A/G G A
rs579694305
MGI SNP Detail		 Chr9:88949074 Rr684358 within coordinates of
Tssr86422 26 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A
rs583152737
MGI SNP Detail		 Chr9:88949078 Rr684358 within coordinates of
Tssr86422 22 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs587339467
MGI SNP Detail		 Chr9:88949125 Rr684358 within coordinates of
Tssr86422 21 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581743311
MGI SNP Detail		 Chr9:88949128 Rr684358 within coordinates of
Tssr86422 24 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T
rs583646647
MGI SNP Detail		 Chr9:88949214 Rr684358 within coordinates of
Tssr86422 110 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs587310758
MGI SNP Detail		 Chr9:88949221 Rr684358 within coordinates of
Tssr86422 117 bp downstream
 SNP A/G G G G G G A G G G G G G A A A A G G G G A G G A A A G G G A G A A G A A A G G G A A A G A A G
rs580907752
MGI SNP Detail		 Chr9:88949235 Rr684358 within coordinates of
Tssr86422 131 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 37 of 37
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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